Daphnia pulicaria: 124314393
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Entry
124314393 CDS
T08670
Name
(RefSeq) chondroitin sulfate proteoglycan 4-like isoform X1
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dpz00535
]
124314393
Proteoglycans [BR:
dpz00535
]
Cell surface proteoglycans
Others
124314393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Laminin_G_3
SsfX3_N
hEGF
Motif
Other DBs
NCBI-GeneID:
124314393
NCBI-ProteinID:
XP_046635477
EnsemblRapid:
LOC124314393
LinkDB
All DBs
Position
10:3497284..3527996
Genome browser
AA seq
2586 aa
AA seq
DB search
MKMARILMAMSNHPVTIIVVALFWISLSVAGAASFYGSSYIALPLQEARSTTDLSFRFRT
SRPDALLFLAAGRTDYCLVVLQAAALKVRINLGAGEAEVATPRGLRLDDLAWHDVRIHRK
DADFTLTVDGLHSSKLKLPGRFYELNIHYGLFVGGLGDFREIFLGLWDNFRGCLNDLQYN
GVDVLTKVKDRDKTIAGGASSTSTAVVQQQQQQTDGNAAAAFAVSWDCSAEFDATSEKDM
SFLSADSYVSFGGTGIAKTGSTLRFQLKTQSRDCVLLYSSGPPAKPDFAAVELVEGHLRV
SLDAGGGSAVDLFSDQAVNDGLWHQVELRLAAGTVELKIDGKSSSSSSSNVRDSGFLTSS
PSNKYLELSGQIYLGGVEVARHARALIQGVRTANSSLRGCIRRLELDGRLLGLRDARVTR
HVAADCQWHYPCTSINPSPCVDGAQCSQDGLDHFRCECPQQPCTKPEFINYKAAVTSSST
SVITGPALGPDTHPPVLNLSPVQVTEGGSMTLTSRHLQVQLDYEKFGVRESGVMFHVVRP
PQYGRLFSTLWRRADEATFTLLDVHSDRVRYVHDGSETLRDSALLELELAPRQGFLLPAY
LQKRQRFVLHLSVSPVNDPPELSLSPGKAVLRLVKHTRKALTPDLLAAFDPDNQPKDLLY
SVLNSKSDGDMEGSIENKMQSGVAISSFTQEDVNQGRIWYVHRGSPNGRLALRVSDGAES
GPTAVLRIAAFDLQLFLANNTGLLVPVNGSAALTAANLTFSTNAPDQELDIRYDITRPPQ
HGQIQAWRSGRWQSINWFNSGQLQRAERIRYVHLPTGFQPPASQDDFQFSVSVALEVAEV
FRSPIMYQFRFQLLDAVLREENNRGLAMTGGSTQSVAIGSAQLKFVVEPQSSAEEEVVYT
LLDPPLYGSLWIQSQSSPLDTGSKWSQSLLNSQRLHYRLARRTLSSLGDGFTFRVASSSG
LASSDLHRFEINYAPGNDTPTTAAVTIGELLVNEGETAVLQASLLGFSLPMAINYSVLEK
PRHGQLNLLDVGKRSVMRKNISWFGSDDLTDQRIVYTHDDSESITDQFLFLARPRLAPDD
PSKDFQYVGTFPVRAHMKNDNPPVRVGDQVLRVVTNGERRLSPDILRYIDPDVETSPASI
VYSPRGVPNGAFYLTDRPDVQVFQFSQEDVNDGKILFRHVGSPYGRTTLWVTDNQYHVTG
TLEVQASEPFLERINQTKVTVRRGHFVALGVAQLGMVSNLDYDSNELAFYLLDQPQHGLV
QMNGSTILKMESFTQEDLLAGKVTYENKNQTDGKDWFKVRAVLRRVEYECVVEVRIYPET
YWQPMKVLQNELVTVEEGTSFTIDSSSLKISHPQGVNRLDVTYIVHQPPLHGYLEVDRDE
HEYEDLVTGRSANLLPPEVHLFDQSAIDEQRLHYIQSGANQSSDSFVFDVTNGVVTLTNL
TFQLAIIPKSIYLLTRPIEVLEGGHSVLTVSDLKIVTRYYADKVDSFLVVKMPVHGHLQL
KGVSAETEPLTRFTYTQLIEKQVLYWHDGSEEANDTLEIVALAGKKESLPATIQIQVRPV
DDERPTLVNNTGILVWQGSTTVLDKSQLGASDVDTLPQSIEFSFGRADCGYMASGPNLSD
PVTTITQHQIDLHQIAFVHQGRTNCTVPFNLTDGQSAMPSQHHLQISARKMQVRLVRNQR
LHVFPMMQQSITSVQLLAVTSGDILTNRQQNVPRFQVTRPPRLGRLLLEQADGSTKRVTS
FTQRDLNQSLVIYEHTEPFADVSVNDSFVIDIMSDLSSPLQQQQFNIEISVATMAEGGLD
RYLGLVALETEEGGTAIIREKNLNLSGIVQLISSYQGVLATQPPRLRLVLSQAPQHGFVS
VSGRRVDLGSEMTAEEIASGQVEYQHDHSDTLEDWIGLTVLLQRPEKGSDRPDILLYNGT
LRVNILPVNDQIFQLLTKAPAMTVVERQWRAITAEVLLTEDADTSAKDLIYDVIQAPQFG
KLALTAENATTLAMAGTTIGPPLVRFSQDDVNRGRVVFLHDGTMDPRSTFFIFRVSDGHF
KADSGVFSIHFEPLTLRFVNHSVIGIQQGQSTAIVVNSSMGAESNGQRRHIFYNVTKEPE
NGKLYINDFPVTTFGQSNIDKEELLYVQTNMTASFDWFQVTVWNMAVVLERQMFNVSVIP
LLANNPSAGKRPIRAIAGEKTAITLAMLDAGRLATLTNSNPTFTIIRKPRYGKIRKIVPS
SSGSGMNRLVKRQSGNGGGNKEKDTYVFSHEDVQSQFIFYVTRKMDNLNETHVMDSCEYR
LTAPNVQPAMGVVEFLLLPSGSAGSTLVAASKNSIDVIQGQQTPNHNFANPRHPSSPDIV
TENTLAGLGLGVMTNDIFLIVGIVCGILGLGLVILITIKCRMKPPMHKHPKNDQNNPTAG
DMQLYRLSGTLKNSHQKGGVSDFQVTDAYRIPANMHHHPRDFADTDSDPEPPPPPRLDYL
DPPLSPRPSRALRGIGASPISACSTISSLNGRPRGSWHQPQQHDLSSGSSMGPSVPQCKI
IPLLNPLLSERSESETSELVNARYPYGIADESMEEWAMLDPDVQCSNSTYSSRTTNPMLR
KNQYWV
NT seq
7761 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggcgagaattttaatggccatgtcaaatcatcccgtcacgattattgtggtg
gcacttttctggatttccctcagcgtcgccggcgcagcgtctttttacggatcgagttac
atcgctctgccgctgcaggaggcccgctcgacgacggatctgagcttccggttccgtacg
tcgaggccggacgctcttcttttcctggcggccggacggaccgactattgcctggtggtg
ctgcaggcggcggccctcaaggtgcgcatcaacctgggagccggcgaagcggaggtggcc
accccgcgcggcctccgcctcgacgacttggcctggcacgacgtgcgcatccaccgcaaa
gacgccgatttcacgctgactgtcgacggccttcactcatccaagttgaaattgcccggc
cgtttctacgagctcaacattcactacggactctttgtcggcggactcggcgactttcgc
gaaatttttctaggactctgggacaactttcgcggatgtctcaacgacctccagtacaac
ggcgtcgacgttttgacaaaagtcaaagaccgcgacaagaccatcgccggcggcgcatca
tccacctcgacggccgtcgtccagcagcagcagcagcagacggacggaaatgcggcggcc
gccttcgccgtcagctgggattgcagcgccgagtttgacgccacatccgagaaggacatg
agcttcctgtcggccgactcgtacgtctcgttcggcgggacgggcatcgccaaaaccggg
tccaccttacgattccagctcaagacgcagagccgcgactgcgttttgctctacagcagc
ggaccgccggccaagccggactttgcggccgtcgaactcgtcgagggacatttgcgagtc
agcctggacgccggcggcggaagcgccgtcgatctcttcagcgatcaggccgtcaacgac
gggctctggcatcaggtggagctgcggctggccgccggaacggttgaattgaagattgac
ggcaaatccagctcgagcagcagcagcaacgtccgcgattccggattcttgacgtcgtcg
ccgtccaacaaatacctggagctgagcggacaaatctatttgggcggggtggaagtggcc
cgtcacgcccgggctctcattcagggcgtccggacggccaacagcagtctgcgcggctgc
atccggagactggaattggacggccgtttgttgggtctccgcgacgcccgggtgacgcgt
cacgtggccgccgattgtcagtggcattacccgtgcacttccatcaatccatcgccgtgc
gtcgacggggcccagtgctcgcaggacgggctggatcatttccgctgcgagtgtccccag
cagccgtgcaccaaaccggaattcatcaactacaaggcggccgtcaccagcagcagcaca
tccgtcatcaccgggccggccttgggtcccgacacccatccgcccgtcctcaatctttcg
cctgtccaggtgacggaaggaggttccatgacgctgacgtcgcgccacctgcaagtgcag
ctggactatgagaaattcggcgtccgtgaatcgggcgtcatgtttcacgtggtcagaccg
ccgcagtacggccggctcttctcgacgctttggcgacgggccgacgaggccactttcacc
ctgctggacgtccatagcgatcgtgtccgctacgtccacgacggatccgagacgctgcgt
gattcggccctgctggaactggagctggccccccgacagggattcctcctgccggcctac
ctgcagaagcgccagcgcttcgtcctccacttgtccgtcagtccggtcaacgatcctccg
gaattgtcgctatcgccgggcaaggccgtcctccggctggtcaaacacacccgcaaagct
ctgacgcccgacctgctggccgccttcgatccggacaaccagcccaaagatcttctctac
tcggttctcaactcgaagagcgacggcgacatggaaggttccatcgagaataaaatgcag
tcgggcgtggccatcagcagcttcactcaagaggacgtcaatcaagggcgcatttggtac
gttcatcgcgggtcgcccaatggccggctggcgctgcgcgtgtcggacggagccgagagc
ggaccgacggccgtcctgcggatcgccgcctttgatctccaacttttcctggccaacaac
actgggctcctggttcccgtcaacgggtcggccgctttgacggccgccaatttgaccttt
agcaccaatgccccggatcaagagctggacatccgctatgacatcacccggccgccgcag
cacgggcagattcaagcctggcgatctgggcgctggcagtccatcaactggttcaattcg
ggtcaattgcagcgggccgagcgcatccgctacgtccacctgccgactggattccaaccg
ccggctagccaggacgatttccagttttcagtttcggtcgccctggaggtggctgaagtc
ttccgctcgcccatcatgtaccaatttcggttccagctgctggacgccgtgttgcgcgag
gaaaacaatcgcggactggccatgacgggcggatcaacgcaatcggttgccatcgggtcg
gcccagctcaagttcgtcgtcgagcctcagtccagcgccgaggaggaagtggtttacact
ctgctggacccgccgctctacggctcactgtggatccagtcgcagtcgagtccgctggac
acgggctccaagtggtcgcagagtctcctcaactcgcagcgactccactaccgtttggcc
cgtcggacgctgtcgtcgctgggcgatggcttcactttccgcgtggcttcgtcgtcggga
ctcgcatcgtccgacctgcatcgcttcgagatcaactacgcaccgggcaacgacactccc
accacggccgccgtgactatcggcgagttgttggtgaacgaaggcgaaacggccgtcctg
caggccagcctattgggcttctcgctgccgatggccatcaattactctgtgctggaaaag
cctcgccacggccaactcaatttgctggacgtcggcaagcgatccgtgatgcgtaaaaac
atcagctggttcggctcggacgatctaactgatcaaaggatcgtttacacgcacgacgac
agcgaatccatcaccgatcaattcttgtttctcgcccgtccacgactcgcccccgatgat
ccctcgaaggatttccaatacgttggcacgtttcccgttcgcgctcacatgaagaatgat
aatccgcccgtccgtgtcggcgatcaagtcctccgcgtcgttaccaatggagagcgtcga
ctcagtcccgacatcctaagatacatcgatccggacgtggaaaccagcccggccagcatt
gtctattcaccgcgcggagtgccgaacggggccttttatctgacggacagaccagacgtt
caagtattccagttcagtcaggaagatgtgaacgacggcaaaattctcttccggcacgtc
ggcagcccgtacggacgcactacgctgtgggtgacggacaatcagtatcacgttaccgga
acgctggaagtgcaggcgtcggagcctttccttgaacggattaaccaaacgaaagtgacg
gtgcggcgcgggcattttgttgctttaggtgttgcccagctgggcatggtttctaatctc
gactacgactcgaacgagttggcgttttacctgctggaccagccgcagcacggcttagtg
cagatgaacggctcgacgattttgaagatggaatcgttcacccaggaggatctcctggcc
ggcaaagttacttacgagaacaagaatcagacggacggcaaagattggtttaaagtgcgc
gccgtactcaggcgggtggagtacgaatgcgtcgtcgaggtgcgcatctacccggaaacc
tattggcaacccatgaaggtgcttcaaaacgaattagtcactgtagaagaaggtacaagt
ttcaccatcgactcgtcttcgttgaaaatcagccacccgcaaggcgtcaaccggctagac
gtgacgtacatcgtccaccaaccgccccttcacggctatttggaggtagaccgagacgag
cacgagtacgaggacctggtgacgggccgcagtgccaacctacttccgcccgaagttcac
ctcttcgaccagagtgccatcgacgagcagcgcttacactacatccagtctggcgccaat
cagagctcggattccttcgtcttcgacgtcaccaacggcgtcgtgacgctgaccaatctg
acttttcagctggccattatccccaaatcgatttacttgctcacccggcccattgaagtc
ctcgaaggcggacattccgtcctgaccgtctccgacctcaaaatcgtgactcgctactac
gccgacaaagtcgacagtttcctggtcgtcaaaatgcccgttcacggccacctccagctg
aagggcgtctcggctgagaccgaacccttgactcgctttacttacacgcaattgattgag
aaacaagttctctattggcacgatggaagtgaggaggccaacgatacactggagattgtc
gccctcgctggtaaaaaggaaagtcttccggccactattcagattcaggtgcgaccggtg
gacgatgaaaggccaacgcttgtcaacaacacgggcattttggtttggcaaggatctacc
acagtgctggataaatcccaacttggtgcatccgatgtcgatacgcttccgcagtctatc
gagttctctttcgggcgtgcggattgcggctacatggcgtcgggacccaacttgagtgac
ccagttaccaccatcactcaacatcaaatcgacctgcaccaaattgcttttgtccatcaa
gggagaaccaactgcactgtccctttcaatttgacggacggccagtcggcaatgcccagt
caacatcatttgcagatcagcgctcgcaagatgcaggtgcgactggtgcgcaatcagcga
ctccacgttttcccgatgatgcagcagtcaatcacctcggttcaattgctggccgtgacc
agtggcgacatattgacgaaccgccagcaaaacgtcccccgcttccaggtgactcgcccg
ccacgacttgggcggctactcctggaacaagccgacggttccaccaagcgagtcaccagt
ttcacccaacgcgatctcaatcaaagtttggtcatctacgaacacacggaaccgttcgcc
gacgtcagtgtcaacgacagcttcgtcattgacatcatgtccgatctcagctcgccgctt
caacagcagcagtttaacattgaaatttccgtcgccaccatggccgaaggtggactcgac
cgctatcttggtttggttgcactggagactgaagagggaggcacagcaattatacgtgaa
aagaatctgaacttgagcggaatcgtccagctgattagcagctatcagggcgtgctggcc
acccaaccgcctagattacgtctggtattatcgcaagccccacagcacggattcgtgtcc
gtgagcggtcgacgagtggatctcgggagcgagatgacagcggaggaaatcgcgtctggc
caagtggaataccagcacgaccattctgataccttggaagattggatcggcctgaccgtt
ctgctgcaaaggccggaaaagggatccgatcgaccggacattcttctctacaacggaacg
ctgcgcgtcaacatcttgcccgtcaatgaccaaatctttcaactgttgaccaaagctccg
gcaatgacggtagtcgagcgtcaatggagagccatcacagccgaagttctgctgacggaa
gacgccgacacatccgccaaggatttgatctacgacgtgattcaagcgccgcaatttggc
aaattggccttgacggctgaaaacgccacaactttagctatggccggaactacgattggg
ccgccgctggtccgtttcagccaagatgatgtcaaccgagggcgggttgtctttctgcat
gacgggacgatggatccgcgatcgacatttttcattttccgcgtatcggacggccatttt
aaagcggacagcggtgttttcagcattcactttgagccgctgacgctccgtttcgtcaac
cactccgtcatcggcatccagcagggccaatcgacagccatcgttgttaattcttctatg
ggtgctgaatcgaatggccagcgccgtcacattttttacaatgtgacaaaggagccggaa
aacggtaaactttacatcaatgactttcccgtcaccacatttggccagtcgaacatcgac
aaggaggaattgctttatgttcagaccaacatgacggcttcgtttgactggttccaagtg
accgtttggaacatggctgttgtgttggagaggcagatgttcaatgttagcgtgatacca
cttttggccaacaatccgagtgcgggcaaacggcctattcgcgcaattgccggagagaaa
acggccatcactttggccatgctggacgccggacggttggccacgctgacaaatagcaac
ccgactttcactatcatccgcaaaccacgctacggcaaaattcgtaaaattgttccctcc
tccagtggcagtggaatgaatcgactcgttaaacgccaatcgggcaacggtgggggcaac
aaggaaaaagatacttacgtcttcagtcacgaagatgtccagagtcaattcatattttac
gtgacgcgaaaaatggacaacctgaatgagacgcacgtgatggacagctgcgagtatcgt
ctgacggcacccaatgtccagccggctatgggtgtcgtcgaatttcttcttttgcccagc
ggatccgccggctctactttagttgcggccagtaaaaacagcatagacgtcattcagggc
cagcaaactccgaaccacaatttcgccaacccgcgccatccatcgtcgcccgacattgtc
acagaaaacactctggctggcctcggtctgggcgtcatgaccaacgatattttcctcatc
gtcgggatcgtctgcggcattttgggacttggccttgtcatcctcatcactatcaagtgt
cgcatgaaaccgccgatgcacaaacatcccaaaaacgatcaaaacaatccaacagcagga
gacatgcagctttatcgcttgtctgggactctgaagaattctcaccaaaagggtggcgtt
tcggatttccaagtgacggacgcctatcgcatcccggccaacatgcaccatcaccctcgc
gatttcgccgacacggacagcgatcctgaaccgccgccacccccaaggctcgactatctg
gatccacccttgtctcctcgcccatcacgagccctgcgcggaataggcgccagccccatc
agcgcctgtagcaccatcagttcgctgaacggccgacctcgaggatcttggcatcagccg
cagcagcatgacttgtcgtctggatcgtccatgggtccttcggtaccccagtgcaagatt
attccactactcaatccactgctgtcggagcgctctgagtcagagacgtcggaactagtc
aatgcccgttatccatacgggatagccgacgaaagtatggaagagtgggccatgttggat
cctgacgttcagtgtagcaactccacttattcctcgcgtaccaccaacccaatgcttagg
aaaaatcagtattgggtttaa
DBGET
integrated database retrieval system
