KEGG   Daphnia pulicaria: 124329030
Entry
124329030         CDS       T08670                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dpz  Daphnia pulicaria
Pathway
dpz03030  DNA replication
dpz03410  Base excision repair
dpz03420  Nucleotide excision repair
dpz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dpz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124329030
   03410 Base excision repair
    124329030
   03420 Nucleotide excision repair
    124329030
   03430 Mismatch repair
    124329030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dpz03032]
    124329030
   03400 DNA repair and recombination proteins [BR:dpz03400]
    124329030
Enzymes [BR:dpz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     124329030
    6.5.1.6  DNA ligase (ATP or NAD+)
     124329030
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     124329030
DNA replication proteins [BR:dpz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    124329030
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     124329030
DNA repair and recombination proteins [BR:dpz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     124329030
   NER (nucleotide excision repair)
    Other NER factors
     124329030
   MMR (mismatch excision repair)
    Other MMR factors
     124329030
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C FERM_N_2
Other DBs
NCBI-GeneID: 124329030
NCBI-ProteinID: XP_046643910
EnsemblRapid: LOC124329030
LinkDB
Position
3:8829940..8834013
AA seq 849 aa
MDGQGQRLITSFFCKPRATSVKQEVKEENIEKKSTDDTSSPEKNSSLPDKPAVQSAKKKV
IKKLDSDDEEPVSQKKEKNSPLPDKPVQSAKKKVKKLESDDEEPVSRKKRRKCAVSSSSE
DSEPDSAIEKPAVLKKADIFLKSVKSPTKSSKLPSSNETPLNGKLEIKKSNVSPTTKDAH
DSKDGVTELLNPDSYNPGKQNYHPIQDATWKKGENVPYMVLAKTLELIEETSSRLKMIEI
LANYFRSVFLLSPDDLLCSVYLCLNQLAPAYMGIELGVGEGIIVKAIAQATGRATDKVKS
DVATKGDVGLVAEASKGTQRTLSMFKPVSLTVKSVFTKLTEVAVMTGNSSQTKKVDKIHG
ILVAAKQLESRFITRSLAGKLRIGLAEQSVLQALAFAATATPPNQSTPPTQLNCFAGLSS
ETIKAKVEASAVILKTAYCQCPSYDQIIPVLLREGVEALPLHCTLTPGVPLKPMLACPTR
GVGEVLQKFESTKFTCEWKYDGERAQIHLLENGEIRIYSRNQENNTSKYPDIISRFQSWI
EPSASVRSAILDTEAVAWDTDKKQILPFQILSTRKRKDAVEADIKVQVCVYAFDLLYLNG
ESLVTMPLIERRQRLWNSFHKVDGQFGFATSRDPQTVEEIEEFLDESLKGNCEGLMVKGL
VKDATYEIAKRSKNWLKLKKDYLDGIGDTIDAVVIGGYLGRGKRTGLYGGFLLACYDESN
EEYQSLCKIGTGFSDEDFQAHSDFLKNHKIPKPKPYFRFDPSLSPDDWFEPVQVWEIKCA
DLSISPVHRAATGIVDPVKGISLRFPRFIRIRPDKNPENATSSEQIADLYNSQEQVKNKK
TDDDEEGFY
NT seq 2550 nt   +upstreamnt  +downstreamnt
atggatggtcaaggacagcgtctaataacgtcttttttttgtaagccacgtgcaacgtct
gttaagcaagaagtaaaagaggaaaatattgaaaagaagagtactgacgacacatcgtca
ccggaaaaaaacagttctttaccagacaagccagcagttcaaagtgctaagaagaaagta
ataaagaaacttgacagtgatgatgaggaacctgtttctcagaaaaaagaaaaaaacagt
cctttaccagacaagccagttcaaagtgctaagaagaaagtaaagaaacttgaaagtgac
gatgaggaacctgtttctcggaaaaagagaagaaagtgtgcagttagtagcagcagtgaa
gattcagaaccagatagtgcgattgagaaaccggctgtgcttaaaaaagcagatattttt
ttgaaaagtgtgaaatccccaactaaatcttcaaaattaccttccagtaatgaaactcct
ctcaatgggaaacttgaaattaaaaaatctaatgtgtcaccaaccaccaaagatgcacat
gattcaaaagatggtgtaactgaattgttgaatcctgattcatataatcctgggaaacaa
aactatcatcctattcaagatgcaacatggaaaaagggagaaaatgtcccttacatggtt
cttgctaaaacactggaattaattgaagaaaccagttccaggttaaaaatgatagagatt
ttagctaactatttccgaagtgttttcctgttgtcaccagatgatttactatgttctgtt
tacctgtgtttaaatcagttagcccctgcatacatgggcatagaacttggtgtaggagaa
ggcataatagttaaagcaattgcacaagctactggaagagcaacagataaagttaaatct
gatgttgctactaaaggggatgttgggttggtagcagaggcatccaaaggcacacagagg
actctttctatgtttaaaccagtgagtttaactgtgaaaagcgttttcactaaattaaca
gaagtagccgtgatgactggaaatagttctcaaacaaagaaagttgataagattcatgga
atactcgttgctgcaaagcaattagaatcacgttttattacccgatcgcttgctggaaaa
cttcgtattgggttagctgaacaatcagtacttcaagctttagcttttgcagctacggca
actcctccgaaccaatctacaccgcctacccagttgaattgttttgcgggacttagtagc
gaaaccattaaagcaaaagtggaagcttcggcagttattttgaagacagcatattgccaa
tgccctagctacgatcaaattattccagttctcttacgcgaaggtgtagaagcgcttccg
ctacactgtacactaactccgggtgttccactaaaacccatgttagcgtgtcccacacga
ggagtcggagaagtattacagaaatttgaatctaccaagtttacttgcgaatggaaatat
gatggagaaagagctcagatacatcttctcgagaacggggaaatcagaatttacagcaga
aaccaggaaaataacacttccaaatatccagacataatcagtcgctttcaatcgtggatt
gaaccatcagcttcagtccgttcagctattttggataccgaagctgtagcgtgggataca
gacaagaaacaaattcttccatttcaaatactttcaacaagaaaacgaaaggatgctgtg
gaagctgacatcaaagtccaagtttgcgtttatgcgtttgatttgctctatttaaatggg
gaatctctcgttacaatgccgttaatagaacgccgacaaaggctttggaatagtttccac
aaagttgacggccagtttggctttgccaccagcagagatcctcaaacagtcgaggagatt
gaggaatttttggacgagtcattgaaaggcaattgcgaagggttaatggtaaagggatta
gtcaaggacgcaacttacgaaattgccaaaagatcgaaaaactggttaaaattaaagaaa
gactatttggacggcataggcgatacgattgatgctgtagtaattggtggatatttaggt
agaggcaagcgcactggtctctacggaggatttttattggcatgctacgatgaatctaat
gaagaatatcagtctctttgtaaaataggtaccggttttagcgatgaagactttcaagcc
catagtgatttcttgaaaaatcataaaattccaaaaccaaagccttattttaggttcgac
ccaagcttgtctcccgatgattggtttgaacctgttcaagtgtgggaaatcaaatgtgcc
gacttgtcaatttcgcccgtacatcgggccgccaccggaatcgttgatccggttaaagga
atttctttgagatttcctcgttttatcagaatcaggccagacaagaatcctgaaaatgct
acttcatcagaacagattgctgacctatataacagccaagagcaggttaaaaataagaaa
actgatgatgatgaagagggtttctactaa

DBGET integrated database retrieval system