Daphnia pulicaria: 124344432
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Entry
124344432 CDS
T08670
Name
(RefSeq) nuclear exosome regulator NRDE2-like
KO
K26109
nuclear exosome regulator NRDE2
Organism
dpz
Daphnia pulicaria
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpz03019
]
124344432
Messenger RNA biogenesis [BR:
dpz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124344432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
Motif
Other DBs
NCBI-GeneID:
124344432
NCBI-ProteinID:
XP_046653929
EnsemblRapid:
LOC124344432
LinkDB
All DBs
Position
6:17093591..17097730
Genome browser
AA seq
1171 aa
AA seq
DB search
MFAAYSVKDDSKPSESKKTEETISWLKNESFQQSIIPKTSVAASVEIQSQNSGLLNAEQR
QSDNHLGLKTPTSTCTTTQESPTTADAEVITTSKEYKKSSERRKKKKKDEKHRSKVEKKL
KKKKKSNISNIPPEPELSSIGRKSIFSGGLQLKLEESFYKDVKGCKDNFAFPNMYFKNVA
RHHQMRGILGAHNSSLKPYLKKPKPLRYFGKKSLRRLAKITNLVQPVQPQPSETNPFGIY
DSSTVLYIQGNHIANPDEPPVKTKEFEISRQTALFNEKLRENPHDIDLWLSFIEHQNIAS
LSMTEENADDGKNQHKSHGRSLHPRALLERKVAILDKAIEQNPKSTKLLTARLNIAAEYW
DSSALHQEWRNVLFVNPMSIELWKEYLNFIENSFEGFSVSQVLKTYASCFQKLVQMQQPS
FASHQRPTNLEDFMIDIGMRLCSFLRQCGWTEKSVSLSQALLELCFKRPDDLSLSFVWLK
ALWESHVPRTGEVNCNSGAQMTERQPIRAVHGIDALEDEDAIINSGQSFPVVWHKMEYLR
SHEHFQACSNSSDCDDEDRFVSFADLSQYLFVCEKKDRLQFRLVVGCLVSLGVPLLPASQ
AQLFWAPLVHEDNLLQLLANVPKVASLSSSLPDILNSISYLTFVRRVILQCYSMLTPPHQ
LELALWWLDVERVRIRAIVRSSKQSDINRSWKETKCWIKAFLKNIPSTDSASTVLLYNGY
AAVEREVGNEEEYQKILGQLLQMYSANPLVMDQQQSKTGFRAALIRTWFSYSRSFLQSKN
RQQPNHSSALAQLVALGAGVSFSPHTPPTPAILLKAKRKYQAMLQDFSSSAIECDVSSFD
VETPFFNSPDEFIELLRCYSYFLSLSEGCLPAFQMVQQWLETSQKSDFYFTTENRYNIAF
LRYHIRRESAYVTLLDLLSACREWVKDFQPRLFYDTLCTALAEYPDSMQLLAVLIDSEER
CSMFSGLWNSLTMRAKDAKNKSCYRAALAACLALANREETIKKGEETTFKEWASDAGGIA
TLHLGYRRKLEHLTEYCVTQCSARHVALLWRILMHSAHLTGDSRKCKDLFYRAFRDCPVS
KSICMDIVEYVPASIREVAKLMAEKDLRLRVPLEELDVLLETENEEIFDELQQDPDIKDI
PFDDAKASPEENIESMTSESENDFSNDSSET
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagcttactccgtaaaagatgatagtaagccatccgagtccaaaaagactgaa
gaaacgatcagttggttgaagaatgaaagttttcaacaaagtattatcccaaaaacgtca
gttgctgcaagcgttgaaatccagtcacaaaattcaggtttgttgaatgcagaacagaga
cagagtgataatcatttggggttgaaaacccctacttctacttgtacaactacacaagaa
agtccaacaacagcagatgcagaagttataacaacaagcaaggaatataaaaaaagttcc
gaaaggagaaaaaagaaaaagaaagatgaaaaacatcgaagtaaagttgaaaagaagtta
aaaaaaaagaagaaatcaaacatttcaaatatcccacctgaaccggaattgtccagtatt
ggcagaaaatcaattttttctggtggtttgcaattgaaacttgaagaatccttctacaaa
gatgtgaaaggatgtaaagacaattttgctttcccaaatatgtattttaaaaatgttgcc
aggcatcatcaaatgagaggaatattaggtgcgcacaattcatcattaaaaccttatctg
aaaaagcctaaacctctgcgatactttgggaagaagagtctgagaagattggcgaaaatt
accaaccttgtacaacctgtacaaccacaacctagtgaaacaaatcctttcggaatttac
gattccagcactgtcttgtacatccaaggcaatcatattgcaaatccggatgagccacct
gtaaaaacaaaagaatttgaaatctctcgtcaaacagcattgttcaatgagaaacttaga
gaaaaccctcatgacattgatttatggctttcctttattgaacatcaaaacatagcttcc
ttatcaatgactgaagaaaatgctgatgatggcaaaaatcaacataaaagtcacgggaga
agtcttcacccaagagccttattggaacgaaaggttgcaattttggataaagcgattgag
cagaatccaaagagtacaaaattactcacagcgcgtttgaatattgctgctgaatattgg
gatagctctgccttgcatcaagaatggcgtaatgttcttttcgtcaatcccatgtcaatc
gaactgtggaaagagtacctgaattttatagaaaacagttttgaaggattcagtgtttct
caggttttgaaaacgtatgcatcgtgttttcaaaaactcgtgcaaatgcaacaaccatct
tttgcctctcatcaacgtccaacgaatttggaagacttcatgatagatattggtatgcgt
ctgtgctcatttcttcggcagtgcggttggacagagaagtcagtttcgctttctcaagca
cttttagagttgtgctttaaacgacctgatgatctttcgctatcatttgtttggcttaag
gcattatgggaaagtcatgttcctagaactggtgaagtgaactgcaattccggtgctcaa
atgactgaacgacaacctattcgcgctgtccatggaatagatgcactagaagacgaggac
gcgattatcaactccggtcaatctttcccagttgtgtggcataaaatggagtacttacga
tcccatgaacattttcaagcttgctcaaatagtagcgactgtgacgatgaggatcgcttt
gtttcgttcgctgatctctctcaataccttttcgtatgcgaaaaaaaggatcgcctccag
tttcgactagtagtgggatgcctcgtatcccttggcgtacctcttctaccggctagccag
gctcaactcttttgggctcctctggtccacgaagataaccttctgcagttgcttgcgaat
gttccaaaagttgcatcattgtctagttctctgccagacatacttaacagcatttcttac
ctgacattcgttcgtcgcgtcattctgcagtgctatagtatgttgacaccacctcatcaa
ttggaattagctctgtggtggttggatgtagagagagttcggatacgcgccatcgttcga
tcgtcgaagcaaagtgacatcaatcggagctggaaggagactaagtgctggatcaaagct
tttttaaaaaacattcctagtactgattctgcatctactgttttgctctataacggatac
gctgcagtggaacgtgaagttggaaacgaagaagaataccaaaagattttgggtcaactc
ttgcaaatgtattccgctaatcccttggttatggatcaacaacagtcgaaaacaggattc
agagctgctttgatccgaacgtggttttcttactcgcgttcctttttgcagagtaaaaat
cgccagcagcctaatcactcctcagctttggcgcaattagttgctcttggagcgggtgta
tcattctctccacatacacctcccactcctgcaattcttttaaaggccaaaaggaaatac
caagccatgcttcaggatttctcttcatctgcaattgaatgtgacgtttcaagttttgac
gtcgaaactcccttttttaacagcccagacgaattcatcgagcttctacggtgttactcg
tattttttatccctatcggagggttgcctacctgcttttcaaatggtccaacaatggtta
gaaacttctcaaaaaagcgatttctattttactacggagaatcgatacaatattgcattt
ctcagataccatatccgtcgggagtctgcttacgtcactttacttgacctgttgtcggcg
tgccgagaatgggtgaaggattttcaaccaagattattttatgatacactttgcactgca
ctagcggagtatccggacagtatgcaactgttagctgttttgattgactctgaggagcga
tgcagcatgtttagtggtttgtggaatagtcttacaatgcgtgccaaagatgcaaaaaat
aagtcttgttacagagcagcgctggccgcttgtctagctcttgctaatagggaggaaacc
attaaaaaaggagaagaaacaactttcaaagaatgggcaagtgacgctggaggaatcgct
acgctgcatttaggttaccgacgaaagctggagcatctcacagaatactgtgttacacaa
tgttctgcgcgccatgtagctttgctgtggagaattctgatgcatagtgcacacctgact
ggtgattctcggaaatgtaaagatctgttttatcgggcctttcgagattgtcctgtgtct
aagagcatttgtatggatatagtggaatatgtcccagcttccataagggaagttgcaaaa
ttaatggcagaaaaagatttgcgtcttagagtacccctggaagaattggatgtattgctt
gaaaccgaaaatgaagagattttcgatgaacttcaacaagatcccgatatcaaagatatt
ccatttgatgacgccaaagcaagccctgaagaaaatattgagtcaatgacgagtgaaagt
gagaacgatttcagcaatgattcaagcgagacataa
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