Deinococcus radiodurans: DR_0353
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Entry
DR_0353 CDS
T00025
Name
(RefSeq) ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dra
Deinococcus radiodurans
Pathway
dra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DR_0353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dra03019
]
DR_0353
03016 Transfer RNA biogenesis [BR:
dra03016
]
DR_0353
Enzymes [BR:
dra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DR_0353
Messenger RNA biogenesis [BR:
dra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DR_0353
Transfer RNA biogenesis [BR:
dra03016
]
Prokaryotic type
tRNA degradation factors
DR_0353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Motif
Other DBs
NCBI-GeneID:
1800036
NCBI-ProteinID:
NP_294076
UniProt:
Q9RXG0
LinkDB
All DBs
Position
1:complement(352185..354467)
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AA seq
760 aa
AA seq
DB search
MHVRDLERTFTRQALERLGGWRNITDLLEDLVESGKVIRTRKKTYGLPEAMSLVRGRFQA
SAAGFGFVVPDSNMGKGGGEDYYIPQDRTLEAWNGDTVLVRMDGRGDSRSDRDGGRDNGR
GGRRGQKGDGNPRATVVRIVQRAYKQLVGTLEFSHGHPILKPDDFRARHRILLLPEGLEE
LEAGARVVTELFWPEHTGEDEVFGQVVRVLGAEDDPETETEAVIVKFGLRGEFPDDVQEQ
ANAIPGEIPEEALVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGNFVVGVHIADVSH
YVQEGTPLDGEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPYQDRLTMTALVELSAEGD
ILDVKLSPSVINSKARLTYDEVQAYSEATATLPDHARHLEGDLHLLLKITTKCARSAARR
LTRLQVREVKVDVDKDGRMELIPIREETARGMIEDLMLLANKVVAHYLIEREIPTLFRIH
EEPTLQKFQDVTGAIGRLGFSFPGGEPTPQAYQAVLKQVRGTGRESVVNTLLLRSMQQAK
YAGENLGHFGLAFDEYLHFTSPIRRYPDLVVHRTLKKVLSGDFKAGNREVAQFQGRLPSM
GEHTSDRERTAAEAERDLTKYYQCKWAQEHRGESFMGNVSGVVSSGLYVALDNGVEGKLH
ISHLDDDYYIFIEDAQILKGRSNGKSFRLGDAVQVTISDVKPLARQIDLTLADPEDPDYT
PGSYDLPAAAQETPMTDVKVRARRRRTASRSGRKNSRAFP
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgtccgcgacctcgagcgcacctttacccggcaggcgctcgaacgcctcggcggc
tggcgcaacatcaccgacctgctcgaagacctcgtcgagtcgggcaaggtcatccgcacc
cgcaagaagacctacggcctgcccgaggcgatgagtctggtgcgcggacgattccaggcg
tcggcggcaggcttcggctttgtggtgcccgacagcaacatgggcaaggggggcggcgag
gattactacatcccgcaggaccgcaccctcgaagcctggaacggcgacaccgtcctcgtt
cgcatggatggacgtggcgacagccgcagtgaccgcgacggtgggcgtgacaacggacgc
ggcgggcgccggggtcagaagggcgacggcaacccccgcgctacggtggtccgcatcgtg
cagcgggcgtacaagcagctcgtgggcacgctggaattcagccacggccaccccatcctg
aaacccgacgacttccgcgcccggcaccggattttgctgctgcccgagggtctggaagaa
ctcgaagccggcgcccgcgtcgttaccgaactcttctggcccgagcataccggcgaggac
gaggtcttcggtcaagtcgtgcgcgtgctcggcgccgaggacgaccccgaaaccgaaacc
gaggccgtcatcgtcaagttcggtctgcgtggcgagttcccggacgacgtgcaggagcag
gcgaacgccattcctggcgagattcccgaagaagcgctggtgggccggctcgacctgcgc
gagttcaacatcttcacggtggacgggcgcgacgccaaggatttcgacgacgccattcac
attcagcccacgccggaaggcaacttcgtggtcggcgtccacatcgcggacgtgagccac
tacgtgcaggaaggcaccccgctcgacggcgaagcctatgcccgcgccacgagcgtttac
ctgccgggacgtgtgttgccgatgctgcccgagcacctctccaacggcgtgtgcagcctc
gtgccctaccaggaccggctgacgatgaccgcgctcgtcgaactctcggcggagggcgac
attctggacgtgaagctctcaccaagcgtcatcaactccaaggcgcggctgacctacgac
gaggtgcaggcgtactcggaagcgaccgccacgttgcccgaccacgcccggcacctcgag
ggcgacctgcacctgctgctcaaaatcacgaccaagtgcgccagaagcgctgcgcgaagg
ctcactcgacttcaagtgcgcgaggtcaaggtggacgtggacaaggacgggcgcatggag
ctcatccccatccgcgaggaaacggcgcgcggcatgatcgaggatctgatgctgctcgcc
aacaaggtggtcgcccactacctcatcgagcgcgagattccgacgctgttccgcatccac
gaggaaccgaccctccagaagttccaggacgtgaccggcgcgattggccgcctcgggttt
tccttccccggcggcgagccgaccccgcaggcgtaccaggcggtcctcaagcaagtgcgc
ggcaccgggcgcgagagcgtggtcaacaccctgctgctgcgctccatgcagcaggcgaag
tacgcgggcgaaaacctcgggcacttcgggctggccttcgacgagtacctgcacttcacc
tcgccgattcgccgctatcccgacctcgttgttcaccgcacgctgaaaaaggtgctctcg
ggcgacttcaaggccggcaaccgcgaggtggcgcagttccagggccgcctgccctccatg
ggcgagcacaccagtgatcgcgagcgcaccgccgccgaggccgagcgtgacctcacgaag
tactaccagtgcaagtgggcgcaggaacaccgcggcgagtccttcatgggcaacgtgtcc
ggtgtggtgtccagcggcctgtacgtggcgctcgacaacggcgtggagggcaagctgcac
atcagccacctcgacgacgactactacatctttatcgaggacgcccagatcctgaagggc
cgcagcaacggcaagagcttccggctcggggacgccgtgcaggtcaccatcagcgatgtc
aaaccgcttgcgcgtcagatcgacctgaccctggccgaccccgaagaccccgactacacc
cccggcagctacgaccttcccgctgccgcgcaggagacccccatgaccgacgtcaaagtc
cgtgcccgccgccggaggaccgcgagcaggagcggcaggaaaaactcaagagcattcccg
tga
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