Danio rerio (zebrafish): 553261
Help
Entry
553261 CDS
T01004
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
553261 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
553261 (smg5)
03032 DNA replication proteins [BR:
dre03032
]
553261 (smg5)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
553261 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
553261 (smg5)
DNA replication proteins [BR:
dre03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
553261 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
553261
NCBI-ProteinID:
NP_001020094
ZFIN:
ZDB-GENE-050913-144
Ensembl:
ENSDARG00000041481
UniProt:
F1R7R1
LinkDB
All DBs
Position
16:45693421..45734213
Genome browser
AA seq
1099 aa
AA seq
DB search
MSGPSQDSEPEAKVLHIKRLYRAVVETVHKLDIIISGKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATSKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKASKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPLPAHGSQSASEEEEEHDSVGSVLPDSLIFKMVVIC
LMVVHSLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESDVPALRTDNTDDAD
ARDHSSAALSEERTLQNGSLEEDDDEEEEEKENGEDEPKGNGRTVATKKNQEKKRSAEEK
QKQKRKFSRLSMLRRRRCAHKEDESDLSEGFESDEEEEEEEEGGGGGLVDGLGAPRVQMN
SLGRDTRKGPLPEDGGWESGSEEDEGGTAFDVETDSDMNSQESRSDLEDMEDAENAPQQP
QQEENEQPQTSREENATPPVTNGPSVSNDASISSNLQAMSSQLFQAKRCFRLAPTFSNVL
LRPATTTPPAPELNPAPVQEITPPTGETPRNTSPEIANGTNDKDPDSDSEGSEHSNHSFH
SEKTLSERLEILTNQGLIQVVKVFLDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPEGS
KILETDIGLNKDVTELLSECEHPSLAQTLLLPEDVALRHLPALSVAHRCLDFTSQRPPLT
PLDECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQDNLVQQAKAQFRMAEE
EARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTAVLCQHLGLLRQLAAS
GCFIIIIPRTVIDGLDMLKKENSGARDGIRFLETEFRKGNRYIRCQKESGRSFERDKLKR
QDTEAWHLYKTVDSCRQLTGSQSSGDEDTAGMVTILTGHSLEELSERSASMKAAVQAVAA
AGMELKNIIEFYRQWKEMG
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgagtcaggacagcgagccggaggccaaagtgcttcatattaaacggctg
tacagggctgtggtggaaacggtgcataagttggacattataatcagcggcaagtcgtcg
tacagggaggtcttcaaacctgagaacatcagcttgaggaacaaattgcgagaactttgc
gtaaagctgatgttcctgcatcctgtggattatggacgcaaggcagaagagctgctgtgg
aggaaagtctactatgaggtcattcaggtgatcaagaccaacaagaagcatattcacagc
cgcagtgctctggagtgtgcctacaggacgcatctgattgccggggtgggcttttttcaa
cacctgctgctctacatccagtcacactatcagctggagttacaggactgcatagactgg
acacatgtcaccgacccgctcatcggtcgtaagaaaccagtctcagccacctctaaagag
atggaatgggcccagatggcgtgtcacagatgccttgtgtacttgggagatctcgcgcgc
taccagaatgaactggcgggagtggaggccgagcagctggcggagcgtttctatcaccag
gccctgtctgtcgcacctcacgtcggcatgccgtttaatcagttgggtacgcttgccgga
agtaaattttataatgtggaggctacttactactacttgcgctgtattcagtcagagact
cccttcgacggtgcgtatgggaatttaaagcgtctgtttgacaaggcatccaagatgtac
caccaggtgaagaaacaagaaatgaagaagctttcaccatctcgacagaggtcaaaagac
atcaaaagactgctggtcagcttcatgtatttgcagagtttgttacagcccaagaacagt
ctgatggagacggagctgacgtcgctgtgccagtctgtgctggaagactttaacctggtg
cttttctacctgcctcttcctgctcatggcagccagtcggccagcgaggaggaggaagag
cacgactctgttggttctgtgcttccagacagccttattttcaagatggtggtgatttgt
ctgatggtggtgcacagcctgaagcgaggggcttcaaagcagtacagcgcctccatcgct
ttcacattggctctgttctcccatctggtcaatcatgtcaacattcgactgcaagctgaa
ttggaggagggagagagtgatgtcccagccctgcgcactgataacactgatgacgctgat
gccagagatcacagtagcgctgctctctcagaggagcgaaccctgcagaacggctctctg
gaggaggatgacgatgaagaggaggaggaaaaggagaacggggaagacgagcctaaaggc
aacggaagaactgtggcgacaaagaaaaaccaggagaagaagagatcagccgaggagaag
caaaaacagaagcggaagttctcaaggctctccatgcttcgccgaagacgctgtgctcac
aaggaggatgaaagcgacctgagtgagggctttgagagcgatgaagaggaggaggaggag
gaggaaggtggtggcggtggtctggttgatggtctgggagcccccagggtccagatgaac
tctttaggaagagacacacggaaggggccactgccggaggacggcggctgggaaagcggt
tcagaggaggatgagggtggcacggcttttgacgtggagacagactctgacatgaacagt
caggaatcgcgatcggatctggaagacatggaggatgctgaaaatgcaccacaacagcca
caacaagaggaaaatgagcagccgcaaacgtctagagaggaaaacgccacccctccagta
accaatgggccgtctgtgtctaatgatgccagtatcagcagtaacctgcaggccatgtcc
tcgcagctttttcaggccaaacgctgcttccggctcgcccctacattcagcaatgtgctg
ctccgccctgcaactaccactccccctgccccagaattaaaccccgccccagtccaagaa
atcacaccccctactggggaaacgccaagaaacacgagtccagagattgcaaacggaacc
aatgataaggatcctgactctgattctgagggcagcgaacacagcaaccattcgtttcac
agtgagaaaactctttctgagcgactggagattctgaccaatcagggtcttattcaggtg
gtgaaggtgtttttggattggctgaggacgaacacagacatcatcctaatgtgtgctcag
agttctcaaagcttgtggaacaggctgtcagtgctgcttaatttacttcccgagggaagc
aagatcttagaaacagatataggtctgaataaggatgtaacggagcttttaagtgagtgt
gagcaccctagtttggcccagacgttgttgttacctgaagatgtggctctccgtcatctt
cctgccctcagcgtagcccatcgatgcctggacttcactagccagagaccccctcttacc
cccctggatgagtgtgtggtgcgcgtgtgctgtattcgcagcttcggtcacttcctcact
aatctccaaggcaacgtgctacacttcaacccggaggcgggcatcttcacaagcatcagc
caatcagaacaggacaacctggttcagcaggccaaggcccaattccgcatggcggaggag
gaagctcgcagaaaccggctcatgagagacatggcccagctgcgcctgcagttggaggtt
tctcagctggagggcagtctgcagcagcctaaagcccagtcctccatgtctccttatctg
gtgccagatactgctgtcctctgccagcacctggggctgctcagacagctggctgccagc
ggatgcttcatcatcatcatccctcgcacagtgattgacggtctggacatgctgaagaaa
gagaactctggcgcaagagatggcatccggttccttgagacagagtttcgaaaagggaat
aggtacatccgctgtcagaaagagtcaggaagaagctttgagagggacaaactaaaacgt
caggacacagaagcctggcacctatataagacggtggacagctgtcgtcagctgacggga
tctcagagcagtggagatgaagacaccgccggcatggtcaccattctcacaggacactca
ttggaggagctgagtgaaagatcggcttccatgaaggcggctgtccaggcggtagcagca
gcaggcatggagctaaaaaacatcatcgaattttaccggcaatggaaagagatgggctga
DBGET
integrated database retrieval system
