Danio rerio (zebrafish): 561940
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Entry
561940 CDS
T01004
Symbol
limch1a
Name
(RefSeq) LIM and calponin homology domains-containing protein 1a
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
dre04990
]
561940 (limch1a)
Domain-containing proteins not elsewhere classified [BR:
dre04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
561940 (limch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
561940
NCBI-ProteinID:
NP_001139049
ZFIN:
ZDB-GENE-090312-153
Ensembl:
ENSDARG00000074275
UniProt:
B8A4X7
LinkDB
All DBs
Position
1:18965601..19066377
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AA seq
1019 aa
AA seq
DB search
MASSGDDSASNAQLDQPAEATPESAFQEAQKWIEAVTGRSFGDKDFRSGLENGILLCELL
SSIKPGLVKKINRLPTPIAGLDNLTMFLRGCEEVGLKGSQLFDPGDLQDTSIRANLTGSD
CSRKLKNVLITIYWLGKAANSCATYNGPTLDLKEFEGLLSMMRKECVNDESDSPKRSIRD
SGYIDSWESERSDSLSPPRHGRDDSFDSLDSFGSRSQNTPSPDTVIRCNSDDSEADRKLP
DVRKDDMSARRVSYKEPRAALPFNQYLPNKSNQTNYLPAPLRKRRSDREEDRRSVSNSTS
PVGGERPLRSVSLIDMRDEEDELAYLRPHSQSRHEHLHNQYNKVKEEEDQWQDDLARWKN
RRRSASQDLIKKEEERKMMEKLMTTDGGHGHRKKSIKTYKEIVEEKEKREQELHEQYCKA
SSPEEKAAVLQRYALRFTISDAILEKLQLPKLPSAASPMHTSPLHQPEQKTTSTTLVEAE
VPELSQTTQTQQTVHVKQKITHDEAPAQPKIPKPTPPPKCIKAPEVLSAPSRVPPAPSKP
VPLITPKPYSQPKFSQGFRKSLKSDGLIRVNGDHNQQVIREKANRDPLQSPEVNFSSSPP
KPEIQSQQNEDPIVLETTDHQQDLQTPKPDLEKEVIKKEEESLLSPQKEISKEDTSTTLS
VSEPAGKQPVPDTVMKRNFVVTTTIVTELTQTHPVPLEDTSSTEQIETPMLNLAKRVDHW
TWDPNEERRRQERWQQEQERLLQEKYQREQEKLKEEWEKAQREVEEEERRHHEEERRILE
ETVTPLTPRTSALSSSCGTEAPSLTQPSAPHETIVLSLADWERKQEMLEKQAQTGQSNGL
THSPDPVIAAAQQNGQRAEAQESQITATPQLQFIQDGSWSCKSKGRQEDLKKTASLDRKQ
SPAPSQTTGMRRTGSCENVLGTHPSKSPTPSQDTPPPSPSRSVSGKKLCSSCAHPLGKGA
AMIIETLGLYFHIQCFKCGVCKGLLGDTSAGTDVRIRNGLLNCHECYIKSRAAGQPTTL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggccagttctggagacgactcggcttcaaacgcccagctggatcagcctgcagaagcg
acccccgaatcagcctttcaagaagctcagaaatggatcgaggcagtgacaggaagaagc
ttcggggataaggacttcagaagtggactagagaatgggattttgctttgcgagctgctg
agttcaatcaagccaggtcttgtgaaaaagataaatagacttccaacacccatcgcagga
ctggataatctgacaatgtttctgagaggatgtgaagaggtgggattgaaggggtcacag
ctgttcgatcctggagacctgcaagatacatctatacgagcaaacttaacgggctctgac
tgcagtagaaaactaaagaatgtgctcataaccatatactggcttgggaaagctgctaac
agctgtgcgacatataacggccccacactcgacctgaaagagtttgagggactgctttcc
atgatgcgaaaggagtgtgtaaatgacgagtcagactctcctaagcgcagcatacgggac
agtggttacattgacagctgggaatcggagcgctctgattcgctgtctcctccaagacac
ggccgtgatgattcgttcgacagtctcgactcgtttggctcacgatcacagaacacacca
tcgccggacacagtcattcgctgcaacagtgacgactctgaagctgataggaagttgcca
gatgtgcgtaaggatgacatgtctgcccgtcgtgtatcctacaaagagcctcgtgccgct
ttacccttcaaccagtatctgccgaacaagagcaaccagactaactaccttcctgcccca
ctgaggaagaggaggagcgacagggaggaagaccggaggagtgtgagcaactcgacatct
ccagtgggaggagaacgacccctcaggagcgtgagtttgattgacatgcgtgatgaagag
gatgagcttgcataccttcggccgcacagccaatcacgacacgagcacctacacaaccag
tacaacaaagtgaaggaggaggaggaccagtggcaggacgatttggctcgttggaagaac
cggaggcgaagcgcttctcaagatctgatcaaaaaggaggaggagaggaagatgatggag
aagctaatgacaacggatggaggacacggacatcgcaagaagagcatcaaaacatacaaa
gaaattgtagaggagaaagagaaaagggaacaggagctgcatgaacaatactgtaaggcc
tccagtccagaagagaaagcagctgtgcttcagcgatatgctctccgtttcaccatcagc
gatgccatactggagaaactccagctccccaaactgccttctgccgcctcaccgatgcac
acgtcccccctccatcagcccgagcaaaagaccacatccactacattagtagaagcagag
gttccagaactttcacaaactacccaaacacaacagactgtccatgtaaagcagaagatt
acacatgatgaggcaccggcacagcctaaaatccccaaacctacaccacctcccaagtgc
atcaaagctccagaagtcctgtcggcaccttcacgagttcctccagctccatcaaagcct
gtacccctgatcacccccaaaccctacagccagcccaaattcagccaaggcttccgcaaa
tcgttgaagagtgatgggctgatacgtgtgaacggagaccacaatcagcaggtgataaga
gagaaggctaatagagatcctctgcagagccctgaagtcaacttctcttcctcacctcca
aagccagaaattcaaagtcaacagaatgaggatccaatcgtgttagaaaccacagaccac
cagcaagacctacagacacctaaacctgacctggagaaagaagtcataaagaaggaggaa
gaaagtctgcttagtcctcagaaagagatcagcaaagaagacacctcaactacactttca
gtgtcagaaccagcaggaaagcagccagtgcctgacacagtgatgaagcgcaactttgtt
gtcacaacaaccatagtgacagaactcactcagacgcaccccgtcccactagaggacacg
tccagcacagagcagattgaaaccccaatgttgaaccttgcaaaaagggttgaccactgg
acgtgggatcccaatgaggagcgcaggcggcaggagaggtggcagcaggagcaggagcgt
ctcctgcaggagaaatatcagcgcgagcaggagaaactgaaggaggaatgggagaaagcc
cagagagaagtagaagaggaagaaaggagacaccatgaagaggagagacgaattctggag
gagacagtgaccccgctgacccctcgcacctcagcgttatcatccagctgcgggacagag
gctccgtccctcacacagccctcagctccacatgaaaccattgtcctctcattggccgac
tgggaaaggaaacaggaaatgctggagaaacaggcacagacgggccagagtaacggattg
acacacagtcctgatccagtaattgcagcagctcagcagaacggacaaagagctgaagct
caggagagccagatcacagctacaccacaactgcagttcatacaggatggctcgtggagc
tgcaagtctaaaggcaggcaggaggatctgaagaaaaccgcctcgctggatcgtaaacag
agtccagccccaagccagaccacagggatgaggaggactgggtcatgtgagaatgtttta
ggaacacacccatcaaaatcacccacaccatcacaagacacgccacctccatcacccagc
aggtcagtcagtggaaagaagctttgctccagttgcgctcatccactgggtaaaggagca
gcaatgatcattgaaaccttggggctttacttccacatccagtgttttaagtgtggcgta
tgtaaaggattacttggagacacaagtgctggaactgacgtcaggattcgaaatggactt
cttaattgtcacgagtgctacataaaatcaagggctgctggtcagccaacaacgttgtga
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integrated database retrieval system
