Danio rerio (zebrafish): 569525
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Entry
569525 CDS
T01004
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
569525 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
569525 (lig4)
Enzymes [BR:
dre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
569525 (lig4)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
569525 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
RTT107_BRCT_5
mRNA_cap_enzyme
Globin
Motif
Other DBs
NCBI-GeneID:
569525
NCBI-ProteinID:
NP_001096593
ZFIN:
ZDB-GENE-070820-10
Ensembl:
ENSDARG00000060620
UniProt:
A7E283
LinkDB
All DBs
Position
1:29268034..29271473
Genome browser
AA seq
909 aa
AA seq
DB search
MESVSKSDAKPQAFVAAQVPFIHLCTVLEKIQKTKLRPDKSKILKEFIDSWRNFHAALHK
DNPDTADSFYAAMRLIVPSFERERMAYGIKENMLAKLYIEVLGLPKNGDEANKLLNYRAP
TTSQGEAGDFALMAYFVLKKRCTSQGNLSIKEVNDFLGSVATNNASKQKDQVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAPEFYNVTTDLNKVCRQLHDPSVSL
SEVSIDLFSAFKPMLAAVANIRQIEKQMGNRPFYIETKLDGERIQLHKAGDVYKYYTRNS
YEYTQQFGASPLEGSLTPYIHTVFSPHVVNCILDGEMMAYNPKTETFMQKGSKFDIKRLV
DDSDLQTCFCVFDVLLINNQKFGKEPLKKRYESLETVFSPIKGRIHLVSKSEGRTMQEVV
NSLNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTLKELYDLGVKLAKHWKVYNKNNPP
AAILCGTEKPEVYIEPRNSVILQVKAAEIVTSEMYKTDCTLRFPRIERIREDKEWHQCMT
LDDLNQFRSKASGKLASRHLNIHEDQPEKKKRKIVAKPKKTIGVIDHFKSQDLSKVAKET
DMFEEVEFCVINGDDEHSKAELEKGVARCGGIVVQNPGKDTYCAIAAVQNMRVKNLISSD
QHDVVWATWLLECLENKQVIPWQPRHMIHMSPSTREHFAKEYDQYGDSYYVDTSEQQLRD
VIERISSAEVKSLSVAQIEAENAWDDLPTSIFRPYSAYFDRCADIGDPKSVICGTCLDTR
ALEFRFHGGKVVEKLKEGISHVVVEDMKRALDLKTLRRLHAKKFKIVHESWVTDSIKAGH
VKDEIDYLI
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgtctcaaaaagtgatgccaaaccacaggcatttgttgctgcgcaagttccg
ttcattcacctctgcacagttttggagaaaattcagaagactaaactccgaccagacaaa
agcaaaatcctaaaggaatttatagattcatggaggaatttccatgcagcacttcacaag
gacaacccggacacagcagattcattttacgctgctatgcgtctcattgtgccttctttt
gagagggagcgaatggcttatggtataaaagagaacatgcttgccaaactgtatattgag
gttttaggtctacctaaaaatggagatgaggcaaacaaacttttaaattacagagctcca
accacttctcaaggagaagcaggtgactttgcccttatggcctactttgtcctgaaaaaa
aggtgcacaagtcagggaaatttaagcattaaagaagtcaatgacttcttgggttctgta
gctaccaacaatgccagcaaacagaaggatcaagtgaagaaaagccttttgcatctaata
actcagagttcagctttggaacagaagtggctcattagaatgatcctcaaggacatgaaa
cttggcattagcaaggagactgttcttcaggttttccatccagatgcaccagaattctac
aatgtcaccacagatctgaataaagtatgcagacaacttcatgacccatctgtgtctctc
agtgaagtctccattgatctattctctgcttttaaaccaatgctggctgctgttgccaat
atcagacagatagagaagcaaatgggcaaccggcctttctacattgagacgaagctagat
ggtgaacgcattcaactgcacaaagctggagatgtttacaaatattacacaaggaattct
tatgagtatacccaacagtttggggcctctccactagagggctccctcacaccatacatt
cacactgtctttagccctcatgtggtgaactgcattctagatggagagatgatggcttat
aaccctaaaactgagaccttcatgcagaagggcagtaagtttgatattaaaaggctggtg
gatgactctgatttgcaaacctgcttttgcgtatttgatgtcttgttgataaacaatcag
aagtttggaaaggaacctctcaagaagcgttacgaaagtcttgagactgtcttctccccc
atcaaaggccgtatccacctggtctctaaatccgaaggcagaaccatgcaagaagtggtg
aattctcttaacgaggccattgacaatcgtgaagaggggattatggttaaggatccaatg
tccatttacaaaccagataaacgtggggaaggatggctaaagattaaacctgaatatgtg
gatgggctaatggatgaacttgatctgctgatagtgggtggttactggggtaaaggcagg
agaagtgggatgctttctcattttctctgcgcggtagctgaggtgccaagtcctggggaa
aagcccacggtgttccacacgctgtgtcgcattggatcaggctataccttaaaagaacta
tatgatcttggtgtgaagttggccaaacattggaaagtatacaacaaaaataatcctccc
gcagccattttgtgtgggacagaaaagccagaggtttacatagaaccacgcaactctgtg
atcttacaagtcaaagcagcagagatcgtcacaagcgaaatgtataagaccgactgcaca
ttgcgtttccctagaatagaaagaatccgagaagacaaagagtggcatcagtgcatgacc
ttggatgacctgaaccagtttcggtctaaagcttccggaaagctggcatcaagacatcta
aacatccatgaagaccagcctgaaaagaagaagcgcaaaatcgtcgccaagcccaagaag
accataggagtcattgaccactttaaatcccaggatttgtcaaaggttgccaaagagaca
gatatgtttgaagaggttgagttttgtgtgataaatggcgatgatgaacattccaaagca
gagcttgaaaaaggggtggcgcgctgtggaggcatcgttgtgcagaatcctggaaaggac
acgtactgcgccattgcagctgtgcagaacatgagagtgaagaacctcatctcatcagat
cagcatgatgtggtgtgggctacttggcttttagagtgtctggaaaataagcaggttatc
ccatggcaaccacgtcacatgatccacatgtcaccttccacaagggaacacttcgctaaa
gagtatgatcagtatggagacagttattacgttgacactagtgaacagcagctgagggat
gtcattgaaaggatcagctccgcagaagtcaagagtctgtctgtggctcagatagaagca
gagaatgcttgggatgacttgcctactagcatttttaggccttacagtgcatactttgac
cggtgtgctgacataggagatcccaagtctgttatctgcggtacgtgtttagacactcgt
gccttagaattcagatttcatggcggtaaagttgtggagaaactcaaagaaggaatctca
catgtggtagtagaagatatgaaaagggctctggacctaaagacactgaggcgacttcat
gccaagaagtttaaaattgttcatgaatcatgggttactgattccatcaaagcaggccat
gtaaaggatgagattgactacctgatttaa
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