Desmodus rotundus (common vampire bat): 112304965
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Entry
112304965 CDS
T05907
Symbol
UPF1
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dro
Desmodus rotundus (common vampire bat)
Pathway
dro03013
Nucleocytoplasmic transport
dro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dro00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112304965 (UPF1)
03015 mRNA surveillance pathway
112304965 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dro03019
]
112304965 (UPF1)
Enzymes [BR:
dro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112304965 (UPF1)
5.6.2.5 RNA 5'-3' helicase
112304965 (UPF1)
Messenger RNA biogenesis [BR:
dro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112304965 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
112304965 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112304965
NCBI-ProteinID:
XP_024416410
LinkDB
All DBs
Position
Unknown
AA seq
1123 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAAGLPGDAAVLRXVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYT
KDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGP
LGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQD
RCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLR
YEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMR
LMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVW
KSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQ
VYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH
QTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRY
RALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAK
QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNI
FYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEK
ITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKD
FIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQ
KVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRP
SNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKT
GRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQP
ELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacactgaagag
gccgagcttctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactcta
cccagccagacgcagacgcctcccggaggccccggtggccccggaggtggcggcccgggg
gtcccggtcggcgcgggtgcgggcgctgcaggcttgcctggtgatgctgctgttctgcgg
taggttggaggacccgagggcatcctgcagaatggggccgtggatgacagtgtggccaag
accagccagttgctggccgagttgaacttcgaagaggatgaagaggatacctattacaca
aaggacctaccagtacatgcctgcagttactgcggaatacatgatcctgcttgcgtggtt
tactgtaataccagcaaaaagtggttctgtaacgggcgtggaaatacttctggcagccac
attgtaaatcaccttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccc
cttggggagacagtcctggagtgttacaactgtggctgccgcaacgtcttcctcctcggt
ttcatccccgccaaggccgactcggtggtggtgctgttgtgcaggcagccctgtgccagt
cagagcagcctcaaggacatcaactgggacagctcgcagtggcagcccctgatccaggat
cgctgcttcctgtcctggctggtcaagatcccttcagagcaggagcagctgcgggcccgg
cagattactgcccagcagatcaacaagcttgaggagctgtggaaggagaacccttctgcc
accttggaggatctggagaagccgggggtggatgaggagccgcagcacgtcctcctgcgg
tatgaggacgcctaccagtaccagaacatattcgggcctctggtcaagctggaggctgac
tatgacaagaagctgaaagagtcccagactcaagataacatcacggtcaggtgggacctg
ggccttaacaagaagagaatcgcctacttcactttacccaagactgactctgacatgagg
ctcatgcagggagatgagatatgcctgcggtacaaaggggatctggcacccctgtggaaa
gggatcggccatgtcatcaaggtccctgataattatggtgatgagattgccattgagctg
cggagcagtgtgggcgcacctgtggaagtgacacataacttccaggtggatttcgtgtgg
aagtccacctcatttgacaggatgcagagtgcgctgaagaccttcgctgtggacgagacc
tccgtgtcgggctatatctaccacaaactgctcggccacgaggtggaggatgtgatcatc
aagtgccagctgcccaagcgcttcacggcacaggggctgcctgacctcaaccactctcag
gtttatgccgtgaagactgtgctgcagagaccactgagcctgatccagggaccaccagga
acagggaagactgtgacctcggccaccattgtctaccacctggcacggcagggcaacggg
cctgtgctcgtctgtgctccaagtaacatagctgtggatcagctgactgagaagatccac
cagacaggactgaaagtcgtccggctctgtgctaagagccgtgaggccatcgattccccg
gtgtcattcctggccctgcacaaccagatcaggaacatggatagcatgccagagctccag
aagcttcagcagctcaaggacgagactggggagctgtcctctgctgatgagaagcggtac
cgagccctgaagcgcacggctgaaagggagctgctcatgaacgcagacgtcatctgctgc
acgtgtgtgggtgcaggggaccccaggcttgccaagatgcaattccgctccattctaatt
gacgagagcacccaggccacagagccagagtgcatggtccccgtggtccttggagccaag
cagctgatcctcgttggcgaccactgccagctgggccctgtggtaatgtgcaagaaggca
gccaaggccgggctgtctcagtcgctgtttgaacgcctggtggtgctgggcattcgtcca
atccgcctgcaagtccagtatcggatgcaccctgcactcagtgcctttccatccaacatc
ttctatgagggctctctgcagaacggtgtcactgcagcggatcgagtgaagaaggggttt
gacttccagtggccccaacctgataagccaatgttcttctatgtgacccagggccaggaa
gagatagccagctcgggtacctcctacctgaacaggacggaggctgcaaatgtggaaaag
atcaccacgaagctgctgaaggcaggcgccaagccagaccagattggcatcatcacgcct
tatgagggccagcggtcctacctggtgcagtacatgcagttcagcggctccctgcacacc
aagctgtaccaggaggtggagatcgccagcgtggatgcattccaggggcgtgagaaggac
ttcatcatcctctcctgcgtgcgagccaatgagcaccaaggcatcgggtttttaaatgac
cccaggcggcttaacgtggccctgacccgagcaagatatggggtcatcattgtgggcaac
cccaaggctctgtccaagcaaccactgtggaaccacctgctgaattactataaggagcag
aaggtgctggtggaggggcccctgaacaacctgcgggagagtctcatgcagttcagcaag
ccccggaagctggtcaacaccatcaaccctggagcccgcttcatgactacagccatgtat
gatgcccgggaggctatcatcccaggatcagtctatgaccggagcagccagggccggccc
tcgaacatgtacttccagacccacgaccagctcggcatgatcagtgccgggcccagccac
gtggccgccatgaacattcccatacccttcaacctggtcatgccgcccatgccgcccccg
gggtacttcgggcaggctaacgggccagccgcaggccggggcacccccaaaggtaagaca
ggtcgtggcggacgtcagaagaaccggtttgggcttcctgggcccagccaaacgaacctg
cccagcagccaggccagccaggatgtggcatcacagcccttctctcagggtgccctgacg
cagggctacatctccatgagccagccctcccagatgagccagcctggcctctcccagcct
gagctgtcccaggacagttaccttggtgatgagtttaagtcccagattgatgtggcgctg
tcgcaagactctacgtaccagggggagcgggcataccagcatggtggagtgacgggactg
tcccagtactag
DBGET
integrated database retrieval system
