Dehalobacter restrictus: DEHRE_05395
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Entry
DEHRE_05395 CDS
T02996
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
drs
Dehalobacter restrictus
Pathway
drs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
drs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DEHRE_05395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
drs03400
]
DEHRE_05395
Enzymes [BR:
drs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DEHRE_05395
DNA repair and recombination proteins [BR:
drs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DEHRE_05395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AHF09587
LinkDB
All DBs
Position
complement(1080257..1081198)
Genome browser
AA seq
313 aa
AA seq
DB search
MKLLEVMEPVLSSEIRTGDAWIHQIKWDGIRGLSYIEDGSVQIYTKSGRERTSFYPEIQI
APKLLNGHQAVLDGELVVFNTGNRPSFHLIMNRERLRNSSNLPVYQQKYPVCYILFDLLF
FNGTDLRNRPLEERQDLLRTKVSSSSNITVTDDFTDGSALFKLMKERNYEGIVSKRKNSR
YQAGKKHNDWFKTKISKKILAIVGGLSWKEQFPNSLLLGIFQGDQYLYIGNASLGLAQKD
FQLLKAYASDYTQESSPFDNLKKMKDTTWLKPVLTCWVSFLEWTDSRSLRHPKIIGFSKD
PASEAQGKEFITE
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgctggaagtaatggagcctgtgctgtcatctgaaatcaggacaggtgatgcg
tggatccaccagattaaatgggacggtatcagagggttatcctatattgaagacggcagc
gtccagatctacaccaaaagtggcagggagcgaacttctttctatcctgaaatccagata
gctccaaaactgctgaacggccatcaggccgtactggatggtgaactggttgttttcaat
accgggaacagaccatcctttcatctgatcatgaatcgggaacgcctcagaaacagttct
aatctgcccgtctatcagcaaaaatacccggtctgctacatcttgtttgatcttttgttc
tttaatggcacagacttgcgtaaccgtcctctagaagagagacaagatcttcttcggacc
aaggtgtcatcttcttccaacatcacggttaccgatgattttacggacggttcagctctg
tttaagctaatgaaagaaagaaattacgagggaatcgttagcaagagaaagaacagccgt
taccaagctggcaaaaaacataatgactggttcaaaaccaaaatcagcaaaaaaatcctg
gccattgtcggcggattatcctggaaagagcaatttccaaactcactgctgcttggtatc
ttccagggagaccagtacctctacatcgggaatgcgagtcttggactggcccagaaagac
ttccagcttctcaaggcttacgcttcggattatacccaggaaagcagcccgttcgacaac
cttaaaaaaatgaaggatacgacctggctcaaaccggtcttgacctgctgggtaagtttc
ctggaatggacagacagcaggagtctccgccaccctaaaattattggtttcagcaaagat
cctgcctctgaagcccaaggaaaggaattcatcacggaatga
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