Desulfohalobium retbaense: Dret_0799
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Entry
Dret_0799 CDS
T00989
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
drt
Desulfohalobium retbaense
Pathway
drt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dret_0799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
drt03400
]
Dret_0799
DNA repair and recombination proteins [BR:
drt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dret_0799
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dret_0799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_22
AAA_16
AAA_30
DUF87
UB2H
AAA_5
SLFN-g3_helicase
FlaG
Motif
Other DBs
NCBI-ProteinID:
ACV68090
UniProt:
C8X0Z3
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All DBs
Position
945789..947786
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AA seq
665 aa
AA seq
DB search
MKENFQLVTDMVPKGDQPKAIEKLCANLEAGVSDQVLLGVTGSGKTFTVANVVARLNRPT
LVMAPNKTLAAQLYSEFKELFPNNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSSINEDID
KLRHAATHALLTRRDVLIVASVSCIYGLGSPEYYEKMVVPVHVGQNLAMDQLMSRLVEIQ
YERNDYDFHRGTFRVRGDVLELIPAYRHERALRIEFFGDEIDALYETDPLTGEVLGPQEK
ALIFPGSHYVSDQENLKRAIDDIRDELRARLTWYREENRLVEAQRLEQRTQLDLEMIEEL
GYCNGIENYSRHLDGRAPESPPSCLLDYFPSDFLLFLDESHVSVPQIGGMFNGDRSRKQT
LVDFGFRLPSALDNRPLSFDEFLKRLNQTVYVSATPGNWERDRASGEIIEQVIRPTGLLD
PQVEVRPTGGQMDDLLAECRQRMDKDERVLITTLTKRLAEDLTEFLHSRGVPSRYMHSDI
DTLERVEIIQSLRRGDFHALVGINLLREGLDLPEVSLVAVLDADKEGFLRSARSLIQTFG
RAARNRNGCVLLYADKKTPAMREAMDESHRRRSLQEAFNLEHGITPESIRKRSGHALAHA
GKEQSEMAKAAETTSSYGSDPQKLEKAIARLEREMRQAAKDLAFERAASLRDEAQRLRQT
LVEMG
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaattttcaactcgtgaccgatatggtgcctaagggggaccagcccaaagct
attgaaaagttgtgcgccaatctggaggccggcgtcagcgatcaggtcctgttgggcgtc
accggttcgggcaagacatttaccgtcgccaatgtcgtggcccgtttgaaccgcccgacg
ctggtcatggctcccaacaaaacgcttgccgcccaattgtacagtgaattcaaagaactt
tttcctaacaacgctgttgagtacttcgtcagctattacgattattaccagcctgaagcc
tatctgccccattccgatacctacattgaaaaggactcctcaattaatgaagatatcgac
aagctgcgccatgccgccacccatgccttgttgaccagacgggatgttctcattgtcgct
tcggtatcctgtatatatgggctcggctcaccggaatattacgaaaaaatggtcgtgcct
gttcatgtggggcaaaatctggccatggaccaactcatgtctcggcttgttgaaatccaa
tatgaacgaaacgactatgattttcatcggggcacatttcgggtacggggcgatgtcctg
gagttgatccccgcctatcggcatgagcgtgccctcagaatcgagtttttcggcgacgaa
atcgacgctctgtatgagacggaccccttgacaggggaagttttgggccctcaggaaaag
gcccttatttttcccggcagccactatgtttcggaccaggagaatctcaagcgggccatt
gacgatatccgcgatgaactccgtgcccggctcacctggtatcgcgaggagaatcgactg
gtcgaggctcagcgtctggagcagcgcactcagcttgatctggagatgatcgaggaattg
ggatattgcaacggcattgaaaattactcgcgccatcttgacggccgcgcacccgagtcg
ccgccttcgtgtctgctggattatttcccctccgattttttgctctttctggacgaatcg
catgtgtcagtgccccagatcggtggcatgttcaacggggaccggtcccgcaaacaaacc
ctggttgatttcggattccgtctgccctcggctttggacaaccgaccactctcgtttgac
gagtttctgaagcggctcaatcagacggtgtatgtttccgccacgcccggcaattgggag
cgcgaccgcgccagtggcgagattattgaacaggttattcgccccactggcctgttggat
ccccaggttgaagtgcgacccaccgggggccagatggatgacctgcttgctgaatgccgc
cagcgcatggacaaggacgaacgggttttgatcacgaccttgaccaaacggttggctgag
gatttgaccgaatttctccattcccgtggcgttccgtcacgttacatgcactcggatatc
gacactctggagcgcgtggagatcatccagtcactgcgccgtggagattttcacgccttg
gtcggcatcaatcttttgcgcgaagggctcgatctgccggaagtgtcgctggtggctgtt
ctcgacgcggataaggaggggtttttgcgctcggcgcgctccttgatccagacctttgga
cgggccgctcgcaatcgcaatgggtgtgtgctgctgtatgccgataaaaagaccccggcc
atgcgcgaagctatggatgaaagccaccgccgccgctccctgcaggaagccttcaatctt
gagcacgggattactcccgagagtatccgcaagcgctccggccatgccctggcccatgca
ggcaaggagcaaagcgagatggccaaggccgccgagaccacgagttcttacggcagtgac
ccccagaagttggaaaaggccatcgcccggctggagcgggagatgcgacaggcggccaag
gatctcgcctttgagcgggcggcttccttgcgcgacgaggcccaacggttgcggcaaact
ctggtggaaatggggtga
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