Desulfohalobium retbaense: Dret_2207
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Entry
Dret_2207 CDS
T00989
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
drt
Desulfohalobium retbaense
Pathway
drt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dret_2207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drt03019
]
Dret_2207
Messenger RNA biogenesis [BR:
drt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dret_2207
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Pab87_oct
Motif
Other DBs
NCBI-ProteinID:
ACV69491
UniProt:
C8X4Z4
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All DBs
Position
complement(2509595..2511151)
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AA seq
518 aa
AA seq
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MIQYIAVALIGALVGTAAGVVLNKKIAAKKLQDANVLAERILDESRKEAQAEKKEYLLQA
QDDIYRQKKEMEQELKERESTLKKQELRLQEKEERLQSKQESNNQKESEIVVWEKRLTKQ
ERDLEERQQQLDEIIQQQEKKLEQIAGLTAEEAKKRLLADIESKTRHEAAATIRQIEMEA
KENADRKAREILATAIQRYAGDYVSEHTVTAVELPSEDMKGRIIGREGRNIRAIEAATGV
DLIIDDTPETVVLSAFSPLRREIAKRALERLISDGRIHPARIEDMVKKVEQEMEVKLREI
GEQATFDVGVHGIHPELVRLLGHLHYRTSFSQNVLHHSLDVAFLCGIMAAELGLDVKKAK
RAGLLHDLGKAVDHEVEGPHAVIGADLAKKYNESEEIVHAISAHHEDVPPKSVLDVLVQA
ADSLSGARPGARKELLQNYVKRLEELEGVASGFDGVSKAYAIQAGRELRVVVDCERLGDD
STYLLCKDIAKQVEEKLTYPGQIKVTCIRERRAVEIAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgatccagtatattgctgtggccctgatcggggccctggtcggcacggcggcgggagtg
gttttgaacaaaaaaatcgccgccaaaaaactgcaagatgccaacgtgttggccgagcgg
attctcgacgagtcccgcaaggaggcgcaggccgaaaagaaggagtacctgcttcaagcc
caggacgatatttatcgtcagaaaaaggaaatggagcaggagctcaaagagcgtgaatcg
actctgaaaaagcaggaactgcgcctgcaggaaaaagaggaacgcctgcaatccaaacag
gaaagcaacaaccagaaagaaagcgaaattgttgtctgggaaaagcggctgaccaaacag
gaacgtgatctggaagagcgtcaacagcagctcgatgagattatccagcagcaggaaaaa
aagctggagcagattgcgggactgaccgccgaggaagcgaaaaaacgcttgctggccgat
attgagagcaagacccggcacgaggcggctgccaccattcgtcagatcgagatggaagcc
aaggagaatgcggaccgcaaggcgcgtgaaatcctggccacggcgatccagcgctatgcc
ggggactatgtttctgaacacacggtcacggcggtggaactgcccagcgaagatatgaaa
ggccggatcattggccgtgaagggcgcaatattcgggcaattgaagcggccaccggcgtg
gatctgatcatcgacgataccccggaaaccgtggtcctgtccgcgttcagccccttgcgc
cgcgagatcgccaagcgagccctggaacgattgatcagcgatggccggattcatccggcg
cgcattgaagacatggtcaagaaggtggagcaggagatggaggtcaagctccgcgaaatc
ggggagcaggccacatttgacgtgggggtccacggaatccatccggaactggtccgtttg
cttggccatttgcattaccgcacgagcttttcgcagaatgtcctgcaccactctctggat
gtggccttcttgtgcgggatcatggccgccgaactcggcctggatgtgaaaaaggccaaa
cgcgctggattgttgcacgacctcggcaaggccgtcgatcatgaggtcgaaggaccccac
gcggtcatcggagcggatctggccaaaaagtacaacgaatctgaagaaatcgtccacgcc
atctccgcccaccacgaagacgtccccccgaaatccgtactagatgtgctggtccaggct
gcggacagcctttccggcgcccgccccggtgcgcgcaaggaattgctccagaattatgtc
aaacgcctcgaggaactcgagggcgtggcctccgggttcgacggggtcagcaaggcctac
gctattcaggccggccgggagttacgggtggtggtcgattgcgaacgcctcggcgacgac
agcacctatctgctctgcaaggacatcgccaagcaggtggaggagaaattgacgtatcct
ggacagatcaaggtgacctgtatccgggagcgccgggctgtggaaattgccaaataa
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