KEGG   Devosia salina: K1X15_03375
Entry
K1X15_03375       CDS       T07996                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dsal  Devosia salina
Pathway
dsal03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dsal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    K1X15_03375 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dsal03400]
    K1X15_03375 (ligD)
Enzymes [BR:dsal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     K1X15_03375 (ligD)
DNA repair and recombination proteins [BR:dsal03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     K1X15_03375 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase DNA_ligase_OB_2 DNA_ligase_C
Other DBs
NCBI-ProteinID: QYO77628
LinkDB
Position
688287..690845
AA seq 852 aa
MADKAQDLLKDYKAKRDFAKTQEPPGAAPRSGKAGRGSFVVQKHDATRLHYDFRIELDGV
LKSWAVTKGPSNNPSDKRLAVRVEDHPLEYGGFEGTIPEGEYGGGTVMLWDRGTWEPIGD
PHEGLEKGDLKLRLFGERMKGEYVLVHMKGRDTRRRNAPDRENWLLIKHRDSYARDKDTL
TTRFTRSVATGRDFKAIANGNAPEKPSDVPAEAVWHSDPEEAEKADQKTRLAATAGKGKT
PAFRPVQLATLVDSVPAGEGWLFEMKYDGYRCLAAIAGDNVRLFTRNGLDWTEQFGALVE
PFQKLKIGSALIDGEICAFDDRGRTDFSTLKSVLSNGGRLEFFAFDLLEADGKDMTNLPL
VERKAQLQKLLAKSAKKDPVQYSSHVAGHGQKVLDALCRDGHEGVIAKRADAPYRGERSK
SWLKIKCLKRQEFVVGGWSPSSKRRGFASLLLGTWDGDRLLYRGRVGTGFTQDLLDELNL
KLKKLARKTSPFDAVPKDRARGAHWVTPQLVAEIAYTELTPDDILRHPSFIGLRGDKPAR
EVRMEKPLAIDDDGEAVAEKLGVRLTSPDRVVYPGQGITKSQLVAYYEDVAEAILPHIKD
RPLSLVRCPQGRTRHCFFQKHDTGGFPEQLHSRPIPEKDGERKDYFYVDDLAGLVAGTQM
NVLEWHIWGSHFANLEKPDRLVFDIDPDEGLDFSAITSAAIDIRDHLADIGLTSFPMVSG
GKGLHVIVPLQPHAEWPEVKAFCKGLARNLADAEPDRFTANLSKARRKGRLFIDYLRNER
GSTAICPWSVRSREGAPVAVPVGWDEVPALKAANGFSLAAAADRAKGGDAWPDYFKRKQK
LTASMQAAFAPE
NT seq 2559 nt   +upstreamnt  +downstreamnt
atggcagacaaggcgcaggatctgctcaaggactacaaggccaagcgggactttgccaaa
acccaggagccgcccggcgccgctcccagatccggcaaggcaggccgtggcagtttcgtc
gtgcagaaacacgacgcgacgcggctgcactatgatttccgcatcgaactcgacggtgtg
ctcaagagctgggccgtcaccaagggcccatccaataatccctccgacaagcgtctcgcg
gtgcgggtcgaagaccacccgctcgaatatggcggcttcgaaggcaccatacccgagggc
gaatatgggggtggcactgtcatgctctgggaccgcggcacctgggagccgatcggcgat
ccccatgaaggcctggaaaagggcgacctgaaactgcggctcttcggcgagcgcatgaag
ggcgaatatgtgctggtgcacatgaaggggcgcgacaccaggcgccgcaatgcaccggac
cgggagaactggctgctgatcaagcatcgcgacagttacgcgcgcgacaaggacacgttg
accactcgcttcacccgctcggtcgcaacggggcgcgacttcaaggccattgccaatggc
aacgcgcccgaaaagccgtcggatgtgccggccgaggcggtttggcattcggacccggag
gaggctgagaaggccgatcagaagacccggttggcagcgacagcgggcaagggcaagacg
ccggcctttcggcccgtgcaactggcgacgctggtcgacagcgttccggccggcgagggc
tggctgttcgagatgaagtatgacggctaccggtgcctggctgccatcgcgggcgacaat
gtgcggctctttacccgcaacgggctggactggaccgaacaattcggtgccctggtcgag
ccgtttcagaaactcaagattggctcggcgctgatcgatggcgaaatctgcgccttcgac
gacaggggacggaccgatttctcgacattgaaatccgttctctccaatggcgggcgcctg
gaattcttcgcctttgacctgctcgaagcggatggcaaggatatgaccaacttgccgctg
gtcgagcgcaaggcgcagctccagaaacttctggcaaaatcggcgaaaaaggacccggtg
cagtattcttcccatgttgcggggcacggccagaaagtactcgacgcgctgtgccgcgac
ggacatgagggggtcatcgccaagcgggccgatgcaccttatcgcggcgaacggagcaaa
agctggctcaagatcaagtgcctgaagcgccaggaattcgtcgtcggcggatggtcgcca
tcgagcaaacgcaggggttttgcgtcgcttttgctggggacgtgggacggcgacaggctg
ctctatcgcggccgggtgggcacaggcttcacccaggacctgcttgatgaactaaatctg
aagctgaaaaagcttgcgcgcaagaccagcccgttcgacgccgttcccaaggaccgggcg
cgcggcgcccattgggtcacgccccagctcgtggccgagatcgcctataccgagctgacc
cccgacgacattctccgccaccccagctttatcggtctgcgcggcgacaagcccgcccgg
gaggttcgcatggaaaaaccacttgccatcgatgacgacggcgaagccgtggcggaaaag
ctcggggtgcgcctgaccagcccggaccgcgtggtctatcccggccaggggatcaccaaa
tcgcagctcgttgcctattacgaggacgtggccgaggccatcctgccccatatcaaggac
cgaccactgagcctggtccgctgcccgcaggggcggacgcgacactgcttcttccagaag
catgacactggcggttttccagaacagttgcattcccggcccatccccgagaaggacggt
gaaaggaaggactatttctatgtcgatgacttggcgggccttgtcgccggcacacagatg
aacgtgctcgaatggcacatctggggatcgcatttcgccaatctggaaaagcccgatcgc
ctggttttcgacatcgatcccgacgagggcctcgatttctccgccatcaccagcgccgcc
atcgacattcgcgatcatctggccgacatcggtctgaccagctttcccatggtttcgggc
ggcaaaggccttcacgtcatcgtgccgctgcagccccatgccgaatggcccgaggtcaag
gcgttctgcaaggggcttgcccggaacctggccgacgccgagccggaccgcttcactgcg
aacctgtccaaggcacgacgcaagggccggcttttcatcgactatttgcgcaatgagcgc
ggctcgacggccatttgcccctggtcggtgcgctcccgcgaaggggcccctgtcgccgtg
ccggtcggttgggacgaagtgcctgcgctcaaggccgccaacggattctcgctggccgcg
gccgccgaccgggccaagggcggggacgcctggcccgactatttcaagcgcaagcaaaag
ctcacggccagcatgcaggcggcttttgctccggagtga

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