Devosia salina: K1X15_03375
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Entry
K1X15_03375 CDS
T07996
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dsal
Devosia salina
Pathway
dsal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dsal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K1X15_03375 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsal03400
]
K1X15_03375 (ligD)
Enzymes [BR:
dsal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K1X15_03375 (ligD)
DNA repair and recombination proteins [BR:
dsal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K1X15_03375 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QYO77628
LinkDB
All DBs
Position
688287..690845
Genome browser
AA seq
852 aa
AA seq
DB search
MADKAQDLLKDYKAKRDFAKTQEPPGAAPRSGKAGRGSFVVQKHDATRLHYDFRIELDGV
LKSWAVTKGPSNNPSDKRLAVRVEDHPLEYGGFEGTIPEGEYGGGTVMLWDRGTWEPIGD
PHEGLEKGDLKLRLFGERMKGEYVLVHMKGRDTRRRNAPDRENWLLIKHRDSYARDKDTL
TTRFTRSVATGRDFKAIANGNAPEKPSDVPAEAVWHSDPEEAEKADQKTRLAATAGKGKT
PAFRPVQLATLVDSVPAGEGWLFEMKYDGYRCLAAIAGDNVRLFTRNGLDWTEQFGALVE
PFQKLKIGSALIDGEICAFDDRGRTDFSTLKSVLSNGGRLEFFAFDLLEADGKDMTNLPL
VERKAQLQKLLAKSAKKDPVQYSSHVAGHGQKVLDALCRDGHEGVIAKRADAPYRGERSK
SWLKIKCLKRQEFVVGGWSPSSKRRGFASLLLGTWDGDRLLYRGRVGTGFTQDLLDELNL
KLKKLARKTSPFDAVPKDRARGAHWVTPQLVAEIAYTELTPDDILRHPSFIGLRGDKPAR
EVRMEKPLAIDDDGEAVAEKLGVRLTSPDRVVYPGQGITKSQLVAYYEDVAEAILPHIKD
RPLSLVRCPQGRTRHCFFQKHDTGGFPEQLHSRPIPEKDGERKDYFYVDDLAGLVAGTQM
NVLEWHIWGSHFANLEKPDRLVFDIDPDEGLDFSAITSAAIDIRDHLADIGLTSFPMVSG
GKGLHVIVPLQPHAEWPEVKAFCKGLARNLADAEPDRFTANLSKARRKGRLFIDYLRNER
GSTAICPWSVRSREGAPVAVPVGWDEVPALKAANGFSLAAAADRAKGGDAWPDYFKRKQK
LTASMQAAFAPE
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaggcgcaggatctgctcaaggactacaaggccaagcgggactttgccaaa
acccaggagccgcccggcgccgctcccagatccggcaaggcaggccgtggcagtttcgtc
gtgcagaaacacgacgcgacgcggctgcactatgatttccgcatcgaactcgacggtgtg
ctcaagagctgggccgtcaccaagggcccatccaataatccctccgacaagcgtctcgcg
gtgcgggtcgaagaccacccgctcgaatatggcggcttcgaaggcaccatacccgagggc
gaatatgggggtggcactgtcatgctctgggaccgcggcacctgggagccgatcggcgat
ccccatgaaggcctggaaaagggcgacctgaaactgcggctcttcggcgagcgcatgaag
ggcgaatatgtgctggtgcacatgaaggggcgcgacaccaggcgccgcaatgcaccggac
cgggagaactggctgctgatcaagcatcgcgacagttacgcgcgcgacaaggacacgttg
accactcgcttcacccgctcggtcgcaacggggcgcgacttcaaggccattgccaatggc
aacgcgcccgaaaagccgtcggatgtgccggccgaggcggtttggcattcggacccggag
gaggctgagaaggccgatcagaagacccggttggcagcgacagcgggcaagggcaagacg
ccggcctttcggcccgtgcaactggcgacgctggtcgacagcgttccggccggcgagggc
tggctgttcgagatgaagtatgacggctaccggtgcctggctgccatcgcgggcgacaat
gtgcggctctttacccgcaacgggctggactggaccgaacaattcggtgccctggtcgag
ccgtttcagaaactcaagattggctcggcgctgatcgatggcgaaatctgcgccttcgac
gacaggggacggaccgatttctcgacattgaaatccgttctctccaatggcgggcgcctg
gaattcttcgcctttgacctgctcgaagcggatggcaaggatatgaccaacttgccgctg
gtcgagcgcaaggcgcagctccagaaacttctggcaaaatcggcgaaaaaggacccggtg
cagtattcttcccatgttgcggggcacggccagaaagtactcgacgcgctgtgccgcgac
ggacatgagggggtcatcgccaagcgggccgatgcaccttatcgcggcgaacggagcaaa
agctggctcaagatcaagtgcctgaagcgccaggaattcgtcgtcggcggatggtcgcca
tcgagcaaacgcaggggttttgcgtcgcttttgctggggacgtgggacggcgacaggctg
ctctatcgcggccgggtgggcacaggcttcacccaggacctgcttgatgaactaaatctg
aagctgaaaaagcttgcgcgcaagaccagcccgttcgacgccgttcccaaggaccgggcg
cgcggcgcccattgggtcacgccccagctcgtggccgagatcgcctataccgagctgacc
cccgacgacattctccgccaccccagctttatcggtctgcgcggcgacaagcccgcccgg
gaggttcgcatggaaaaaccacttgccatcgatgacgacggcgaagccgtggcggaaaag
ctcggggtgcgcctgaccagcccggaccgcgtggtctatcccggccaggggatcaccaaa
tcgcagctcgttgcctattacgaggacgtggccgaggccatcctgccccatatcaaggac
cgaccactgagcctggtccgctgcccgcaggggcggacgcgacactgcttcttccagaag
catgacactggcggttttccagaacagttgcattcccggcccatccccgagaaggacggt
gaaaggaaggactatttctatgtcgatgacttggcgggccttgtcgccggcacacagatg
aacgtgctcgaatggcacatctggggatcgcatttcgccaatctggaaaagcccgatcgc
ctggttttcgacatcgatcccgacgagggcctcgatttctccgccatcaccagcgccgcc
atcgacattcgcgatcatctggccgacatcggtctgaccagctttcccatggtttcgggc
ggcaaaggccttcacgtcatcgtgccgctgcagccccatgccgaatggcccgaggtcaag
gcgttctgcaaggggcttgcccggaacctggccgacgccgagccggaccgcttcactgcg
aacctgtccaaggcacgacgcaagggccggcttttcatcgactatttgcgcaatgagcgc
ggctcgacggccatttgcccctggtcggtgcgctcccgcgaaggggcccctgtcgccgtg
ccggtcggttgggacgaagtgcctgcgctcaaggccgccaacggattctcgctggccgcg
gccgccgaccgggccaagggcggggacgcctggcccgactatttcaagcgcaagcaaaag
ctcacggccagcatgcaggcggcttttgctccggagtga
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