Desulfovibrio subterraneus: LN040_03045
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Entry
LN040_03045 CDS
T08953
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LN040_03045 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsb03400
]
LN040_03045 (mfd)
Enzymes [BR:
dsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN040_03045 (mfd)
DNA repair and recombination proteins [BR:
dsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LN040_03045 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WBF69279
LinkDB
All DBs
Position
complement(681081..684530)
Genome browser
AA seq
1149 aa
AA seq
DB search
MILALQNSTQRVVQVARSGPASQARMAHSLRNRDEHVVVVVRNSQELAELKGLLTLFTPE
SSTEETNLTSPVWEQPWTVIPQHPAGSHGKSAWSSRIASLYSLSLRKKHQGVLVSLDNFL
PKLPPVTLFDTHELVLPVGDDTGPDLLLDQCVEWGYSRVPMVTQPGEMALRGDILDIFCP
GYARPVRLEFFGDQLEEIRLFDPSSQRSRGNMQEIVLLPTSPLILSSDQRAKAVQWWKEL
EKHGKLAKGQAGAFTRAAEEGSTPILPGSYYEQAAFLEQWLPKDAVFILPSERELKESLE
ESERTWHAFLDKQAAETGLRQPASMALRSQDQATAVWSANRRVHFEDLVIGVEKQGADLP
ERSYGAFQDIFTSSQDQDRPWQALVSRLRKWTHEKRQVLLAFSNERSRAKFLKLAEQDGL
MPHLRYSLWEKGLFALVAPFRRGIDLVWDKVLILGEDVIQPRTERRERARTGAFAGLKEH
DDLTPGDHLVHRDYGIAIFDGMHRMELGGVANDYLLLRYAGDDKLYLPVDRLGLIQRFKG
PDGGAPALDKLGGAGWLTSKSRARKAIEKIAHDLVEMYAWRRIAKGFGYGPINELYREFE
ASFGFEETPDQARAIQDVLEDMEKPTPMDRLVCGDVGFGKTEVAMRAAFRAACEGKQVAL
LCPTTILAEQHYQTFKSRLGGFPVNIGMLSRFVTRQKQKEVLAAASKGQVDILIGTHRLL
SDDVDLPNLALLVLDEEQRFGVRHKEKLKKFRKNVDVLTLSATPIPRTLQLSMSGIRELS
VIETAPLGRKPVETDLIERDADMLRGYIKRELDRDGQVFWVHNRIEGLERVAEYVRQLVP
EARLGQAHGQMSEKDLETTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLG
QLYQLRGRVGRSDVQAHAVFVVNNLETLQDIARKRLRIIMEMDYLGAGFQVAMEDLRLRG
SGNILGEAQSGQMARVGLDLYLEMLEEEVRRLKGEESLIAVETELNIGVNAHIPETYITD
GRERLRFYKMLSSAVDAVMLQDLELEMRDRFGPLPEELSNFLGVLLFKRFLMSMQVQRAD
IFKDKVRLIWGDKSDAVSPAALVEWVGARASSARLVPPACLEFRMETGGNVRERLENARA
ELTPLLQKK
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgattctggcgctgcagaattctacgcagcgtgttgttcaggtagcgaggagcggtccc
gcttctcaggcccgcatggcccattctctgcgaaacagggatgagcatgtggtggttgtc
gtgcgcaactcgcaggaactggcggaactgaaaggtcttcttaccctttttacgccggaa
agttccactgaagaaaccaaccttacttctccggtctgggaacagccctggacagtcata
ccccagcatcctgccggttctcacggcaagagcgcatggtcttcgcgcattgccagcctg
tactcgttgagcctgcgcaaaaagcaccagggtgttctggtttcgctggataacttcctg
cccaagctgccgccggttacccttttcgacacgcatgagctggtcctgcccgtgggggat
gatactggccccgatctgctgctcgatcaatgtgtggagtgggggtattcccgtgttccc
atggtgacccagccgggagaaatggcgctgcgcggggatatacttgatatcttctgtccc
ggttatgcgcgccctgtccgtttggaattttttggtgaccagcttgaggaaatacggctc
tttgacccttcaagccagcgttcccgcggcaatatgcaggagattgtactgctgcccaca
tcgcctctcattctgagttcagatcagagagccaaggcggtgcagtggtggaaggagctg
gaaaagcacggcaagctggccaagggacaggccggggcttttacccgtgcggcagaagag
ggatcaactccgattctgccggggtcctattacgagcaggcggcttttcttgagcagtgg
ctgcccaaagacgccgtattcattctgccttccgagcgggaacttaaagaatcacttgaa
gagtcagaacgcacttggcacgcctttctcgataagcaagcggctgagacgggccttcgt
cagcccgcaagcatggcccttcgttcgcaggatcaggcaacagctgtctggtctgctaat
cgccgcgttcactttgaagatctggtcatcggcgtggagaagcagggagcagacctgcct
gaacgttcgtatggtgcgtttcaggatattttcacctcgtcgcaggatcaggatcgcccg
tggcaggcccttgtctcccggttgcgcaagtggacgcacgaaaagcggcaggtacttctt
gctttttccaatgagcggagcagggccaagttcctcaagctggccgagcaggacgggctt
atgccccacctgcgctattcgctatgggaaaagggattgttcgcactggtggcaccattc
cggcgcggtattgaccttgtatgggacaaggtgctcatactcggagaggatgtcatccaa
ccgagaacggagcgtcgggagcgggcccgcacaggagcctttgcgggtctgaaggagcat
gatgacctgacgccgggtgatcatcttgtccaccgggactatggcattgcaatatttgac
ggcatgcaccgcatggaactgggcggtgtggccaacgattatctgctgctgcgctatgcc
ggtgatgacaagctgtatctgcctgttgaccggctcggtcttatccagcggttcaaagga
ccggacgggggtgcccctgccctcgacaaactgggcggtgcaggttggctcacctctaag
tcccgggcgcgcaaggccattgaaaaaatcgcccacgaccttgtggaaatgtacgcatgg
cggcgcattgccaaggggtttggctacggccccatcaacgaactgtacagggaatttgaa
gcctctttcggctttgaggaaacgccggatcaggcccgcgccattcaggatgtgctggaa
gatatggaaaagcccacccccatggaccgcctggtatgcggcgacgtgggcttcggcaag
acggaggtggccatgcgggccgcgttccgtgccgcctgtgagggaaaacaggtggccttg
ctttgtcccaccaccatccttgcggaacagcattatcagactttcaagagtcgtctgggc
ggcttccccgtcaacataggcatgcttagccggttcgtgacccgccagaagcagaaggaa
gtgcttgccgcggcctcaaaggggcaggtggatattctcatcgggacgcaccgtcttctt
tcagacgatgtggatctgcccaatctcgctttgctcgttctggacgaggagcaacgcttt
ggcgtccgccacaaggagaagctcaagaagttcaggaagaatgtagacgttctcacgctt
tcggccacccccattcccagaacattgcagctttccatgtcgggcatccgtgagctttcc
gttatagaaacggccccgctcggcagaaaaccggtggaaaccgaccttatcgagcgcgac
gcggatatgctgcgcggctatatcaagcgggagctggacagggacggtcaggtcttctgg
gttcacaaccgcatagagggtcttgagcgcgtggcggagtatgtgcgccagctcgtgccg
gaagccagattggggcaggcacacggccagatgtccgagaaggatctggaaaccaccatg
cacaaattctggcatggtgaactggatgttctggtatgcaccgccattgtggaatccggt
ctggattttccgcgcgccaacacgctgatcgtggaccaggcccagatgttcggactcgga
cagctttaccagttgcgaggccgtgtgggccgttcggatgttcaggctcatgccgtgttt
gtggtgaacaatctggaaacattgcaggatatagcccgaaaacgcctcaggatcattatg
gagatggactacctcggagccggtttccaggtggccatggaagatctgcgtctgcgcggt
tccggcaacatcctcggcgaagctcaatcgggccagatggcccgcgtggggctggacttg
tatctggaaatgctggaagaggaagtgagacgcctgaagggcgaagagtccctgattgcc
gtggaaacggaactcaatattggcgtgaatgcccatattcccgaaacgtacatcacggat
ggaagggaacgtctgcgtttttacaagatgctgtcgtctgccgtggatgccgttatgctg
caggatctcgaactggaaatgcgcgaccgtttcggaccgctgcctgaagagctttccaac
ttcctcggtgtattactgttcaagcgatttctcatgtccatgcaggtgcagagggctgac
atcttcaaggataaggtacgtctcatatggggcgataaatcagatgccgtttcaccggct
gcgcttgtggaatgggttggcgcccgcgcctcttccgcccgtctagtcccgccggcatgc
cttgagttcaggatggagactgggggaaatgtcagagagcgtctggagaatgcccgggcc
gagttgacgcctcttttacagaaaaaataa
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