Drosophila sechellia: 6609220
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Entry
6609220 CDS
T01064
Name
(RefSeq) uncharacterized protein LOC6609220 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dse
Drosophila sechellia
Pathway
dse03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6609220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dse03021
]
6609220
03019 Messenger RNA biogenesis [BR:
dse03019
]
6609220
Transcription machinery [BR:
dse03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
6609220
Messenger RNA biogenesis [BR:
dse03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
6609220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
6609220
NCBI-ProteinID:
XP_002033911
UniProt:
B4HRR0
LinkDB
All DBs
Position
2R:complement(10964204..10974143)
Genome browser
AA seq
1933 aa
AA seq
DB search
MEQLFQNCRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYAHIIVKVVEYYIS
QVAPEFKLPILYLIDSIVKNVKSSYVQLFGQCIVNIFLHAFESVQHSQSQLLEKVRERMY
ALRQTWNEVFPPSKMYALDVKVKRLDSNWPITAKHPIHVNPAIHVNPNFLKPGLVPGNPT
MPSDMEEILQAKTRELLELKKRKLELELEQTKKHLEEQKLQLNQATDAIAGAPIIMPAPT
PPPIHPPITDPALAVHNQRSPGASGNVGPVMHNIPVAPQHFANKPKVNPVNPALLNSVRQ
RDPRLARQMHAASSNLAAPARNDPRLEAKSSSSQKSSRSRSKSPVRNSSSRSGKSGSSSH
SSSLSRKRSESKSSTASTSSSGSDVRHKAQGSSNQPPVKRSGKISSKDSDRYLRNGSPLG
SAKRKSSSPSSSPSKSKRSTSHKSSSSRGKTSSLRSRSRSPVFMDVDLRTGVRSKSPESR
AVAPSSLPLAGASLAASAKAPKDLEKRHPPAPPSPPIIDVSSMDIDLRRPKTPPPPTFDS
VDSLDHKDTTSGHISSTIIQASGASNASPSAASTSKLPAKVSFKIQKQFNKLEKSSANLS
TVSMLNSNPTTSGTPAASLVRQSSPSPSSSSISSQGNVSDALQLSINKLLQVQGGCGAGE
KRPADALPPHIDGEEQPPQHKRSKSTKLDALFGSEDVDLRREILVVKPGVIVVEDDSMDE
SEVDKPTKKSGSPPKKATLEELRAKLANSARIQNKQGKSDKSKDQAVSQRLKQLAELKVN
DDSQEAHDEKVRTILSQAQEMYENHGMNQEQYKDLVQKVVVINENSKIKESRRRDNDLER
NAARDAVLRKRIPKLKGNENHTSGSPHSDGSPRYDDQPAAAPEKPSNKRDKTKREMKRRK
PTKWGEQVDAGAAQRTAWQLANVNNNNNNNNKRAGIQLPVQPQVGFRGMPWQQPPPMVLA
QSAVPPPPQPPSMISMPPVPPVTMTKAINSLDNPMADVVRSITIDGGSKEIRFYNQVAII
FMDGDQPHEIGFQPGQRVILIDHNEPLPLCFNDDYKPFHLDGQLHRIRFGFPSRELYIDE
HWYEIYFGGPAVSVPIGNKLHIIKAEGPPPNVDIGRVRRDLVVGKINMIVDAHTIVPLFL
DARQQTFQLGAEQHSLQFVDSFQYALLDGQLQKMEYGGLPKGMMLNGGRSCFIRFGTLPK
GVIAGKTHVADMVYIKTDAPAEPPKPPPIIVKPPPVVEQPKPAPVAGAPISLPAAAAALE
SLNINDLFQKLVSSGIIGGAAAAPTLPAADQSVAKEPTASATEPSTAPATAAPATLPAGP
PMEPIKRIDLRKPESIKTRQAAVVAVLYLGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNR
RERDSTRKATSRKWYYDLNDWRQYEEIEDVEEREKNFLEAQGQPGGVEALEELSQQRSLD
SPVPTCAAGKDDVDHCCDMCHEKFEQFYNEELEEWHLRSAIRVEDKIYHPLCYEDYKASL
NPPAEIKSDQDVDMNNTDDNAMDTLIKVEDDEDEGMPKTSQAIFEDDDDDVIVLPNEEPS
VTEIVDDDDEDEYVPGNVTRADMGTESQDKTEFNSETKELKKDQVELGEQQQNESANESD
VEIQEPNIPFTDLDTYVEKDEATRAALLNVKIKEEPKDEYEEDEDDGFEDVGTVVSLLPL
PEDEISIHSSETQTHTIGSSASPATIERPASVTSLSLPANEADEVEQGDASADTDAELNG
EKQEATHNLSAVGPALPLASIVNKIKINITKNTSSNSHNSASNTTTTDSQVSAISVIGGS
GAAGGASGAGDAVQQVNAIQTISTIPVLCGGNTFVPKIATSTPSNVINSISVIGSTYGAS
SSSNGSRSTSTASSTPGASAETGSLKSPTPPLATVDPDPEPVVEQKPALRNAALKRTKKV
HNGIETSGLCSIM
NT seq
5802 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctatttcagaactgccgcgacgatgagcggaggatcggggaggagtacctg
tccagtctccaggacctcaactgcaacagcaagccattgatcaatatgctcacgatgctt
gccgaggagaacatcaactacgcccacatcatagttaaagtggtggaatattacatcagc
caggtggcgcccgaatttaaattgcccatactatatttaattgattcgatagtaaagaat
gtgaaaagcagctacgtccaattgtttggacagtgcatagtcaacatattcctccacgcc
ttcgaatcggtccagcactcacagtcgcagcttttggaaaaggtgcgggaacgcatgtat
gccctgcgtcagacctggaacgaggtgttcccgccatccaagatgtacgctctagacgtt
aaggtgaagcgcctagatagcaactggcccattactgccaaacatccaattcacgtcaat
ccggccattcatgttaatccgaatttcttaaaaccgggtttggttcctggtaaccccaca
atgcccagcgacatggaggagattttgcaagcaaaaactcgtgagttgctggagctcaaa
aagcgcaaactggaacttgagctggagcaaaccaaaaagcatttagaggagcagaagctt
cagctgaaccaagccacggacgcgatagctggggcaccgattattatgcctgctcccact
ccaccacctattcatccgccaatcacggatcccgctctagcagtgcataatcaacgatct
ccaggagcatcgggcaatgttggtcccgtaatgcataacataccagtggctccgcagcat
tttgcgaataaaccaaaagtcaatcctgtcaatccggcactgttgaactcggtgcgccaa
cgagatccgagactagcgcgccaaatgcatgcggcgtcctcaaatctagctgcgccggca
cgaaacgatcctcggctggaggccaaatcgagctcatcacagaagtctagtcggtcgcgc
agcaaatcgcctgtgcgcaacagcagcagtcgttctggaaagagtggaagctctagccac
agcagttcgttgagccgcaagcgaagtgagtcaaagagctcaacggcttccacatcttcg
tcgggctctgatgttcggcacaaggcacaaggcagctccaaccagccaccagttaagcgg
tccggtaagatctcgtctaaggattcggatcgctatcttcgcaatggatctcctctggga
tccgcgaaacgcaagagcagctcaccgagtagctcgccatccaaatccaagcgcagcacg
tcgcacaagtcatcctcgtcgcgaggaaagacctcttctctgcgatcccgcagtcgatct
ccagtttttatggacgtcgacctacgcaccggagttcgaagcaagtcaccagagagcagg
gcagttgccccatcatccttaccactggcgggcgcatcactagcagcatcagctaaagca
ccaaaagatttagagaaacgccatcctccagctcctccaagtccgccgattatagatgta
tcgagtatggacattgacttgaggcggccaaagacgccgcctcctccgacattcgactca
gtggatagcctcgaccacaaggatacaactagcggtcacatcagcagcacaataatacaa
gctagtggcgcctccaacgcctccccatcagccgcgtccacttccaaattgcccgcaaaa
gtgtcgttcaaaatacaaaaacagtttaataaattagaaaagtcttcagcgaatctatca
acagtatcaatgctcaactcaaatcccacgacttcaggaacaccagcggcatctctagtc
aggcaatcgtcgcccagtccgtcgtcctcgtcaatttcctcgcagggtaatgtatcggac
gccctgcagctgtcgattaacaagttgctccaggtgcaaggtggttgcggtgctggcgag
aaacgtcccgccgacgcactgccgccacatatcgacggtgaagagcaaccgccgcaacac
aagcgcagcaagtcaaccaaactggacgctctctttggcagtgaggatgtcgacctgcga
cgcgagattctagttgtcaagccgggagtcattgttgtcgaagacgactctatggacgaa
agcgaggtagacaagcccacaaagaaatccggctcaccgcccaagaaggcaacgttggag
gagctgcgcgccaagttggctaactcggctcgaatccagaataagcagggaaagtctgac
aaatccaaggatcaggccgtgtcccaacgccttaagcagctggcggagcttaaagtcaac
gacgattcgcaggaggcgcacgacgagaaggtgcgcaccattctcagccaggcgcaggag
atgtatgagaatcacggcatgaatcaggaacagtacaaggatctggttcaaaaagtagtg
gtcatcaatgagaatagcaaaataaaagagtcccggcgccgagacaacgatctcgagcgc
aatgcggccagggatgcagtgctacgcaaacgtattcccaagctgaagggcaacgaaaat
catacttcgggctcaccgcatagcgatggatcgcccaggtacgatgatcagccggcagct
gccccggagaagccctcaaacaaacgggataagacgaagagggagatgaaacgtcgcaag
cccaccaaatggggcgaacaagtggatgcaggggcagcacaacgcactgcctggcaactg
gccaatgtcaacaataacaataataacaacaacaagcgggccggtatccaattgcccgtt
cagcctcaggttggattccgtggcatgccctggcagcagccgccacccatggtgttggcc
cagtccgcagttccgccgccaccgcaaccgccgtcgatgattagtatgcctcccgtgcca
ccggtgaccatgaccaaggccataaattcccttgacaatcccatggctgatgtagtgcga
agcatcacgatcgacggtggctccaaggagatacgcttctacaaccaggtggccatcatt
ttcatggatggcgatcagccgcatgaaattggtttccagccggggcagcgagtgatcctt
atcgatcacaatgaaccgctaccactttgcttcaacgatgattacaagccgttccacttg
gatggacagcttcaccggattcggtttggcttcccatcgcgcgaactttacattgacgag
cactggtacgagatctactttggcggtccggccgtatccgtgcccattggcaacaaactg
catataatcaaagctgagggtccaccgcccaacgtggacattgggcgagtgcgaagggat
ctggttgtgggcaaaatcaatatgattgtagatgcgcatactatagtgccactgtttttg
gacgccagacagcagaccttccagctgggcgccgagcagcattcgctgcagtttgtggac
agtttccaatatgctctgctcgacgggcagctgcagaagatggagtatggtggtctcccg
aaaggaatgatgctgaacggcggtcgcagctgcttcattaggtttggaacgctgcccaaa
ggagtcattgcaggaaaaacccatgtggcggatatggtatacattaagactgatgctcca
gcagagcctcccaagccgccgccaattattgtgaaaccaccgccagtggtggagcaaccg
aagcccgccccagttgctggtgctcccatttcccttccagcagcagccgctgcactggag
agcttgaacatcaatgatttgttccaaaagcttgtctcgtctggaataattggtggtgca
gctgcagcaccaactctgcctgccgcagaccaatcggtggccaaagagccaaccgcctct
gccaccgaaccctcaactgcacctgcaaccgctgcgcctgctacactgcctgctggtccc
cccatggagccgatcaagcgcatcgatctccgcaagccagagtccattaagacacgccag
gcggctgtggtggccgttctttacctgggaatgcagtgcagcagctgtggagtgcgtttc
ccgccagagcaaacaattaagtacagccaacatttggactggcacttccgacagaatcgt
agagagcgggattccactaggaaagccacttcgcgaaaatggtattacgatctcaacgac
tggcggcaatatgaagaaatcgaagatgtggaggagcgagagaagaacttcctggaggct
cagggacagccgggtggcgttgaggcccttgaggagctctcccaacaacgctccctggat
tcgcccgtgccaacgtgtgctgctggaaaggatgatgtggatcactgctgtgacatgtgc
cacgagaaattcgagcagttctacaacgaagagctcgaggagtggcatctgcgtagcgct
attcgtgtggaggataagatatatcatccgctatgctacgaggactacaaggcctcgttg
aatcctccagcggagataaagtccgaccaggacgtggacatgaacaacaccgatgacaat
gccatggacacactgatcaaagtggaggacgatgaagatgaaggtatgccaaaaacatca
caggccatttttgaagacgacgatgacgatgtcatcgtgctgcccaatgaagaaccaagt
gtcacggaaatcgtcgacgacgacgatgaggacgagtacgttccgggcaatgtgacacgt
gcggacatgggcaccgagtcgcaggacaaaacagagttcaactccgagaccaaagaactg
aagaaagatcaggttgagctcggtgaacagcagcaaaacgaatcggccaatgaatcggat
gtcgagatccaagagccgaacattcctttcacggatctggacacttatgtggagaaggat
gaggccaccagggcggcgctactgaacgtaaagatcaaggaggagcccaaggatgagtat
gaagaggacgaggatgatggattcgaagacgtgggcactgtggtttcgcttttacctctg
cccgaggacgagatctccatacacagcagcgaaactcaaacacacaccatcggctcgtca
gcctcgccggccaccatcgagcggccagcatcggtgacctcgctctccctgcccgccaat
gaggcggacgaggtggagcagggtgatgcaagcgccgatacggatgcggaattgaatggc
gagaagcaggaggccacgcataacctgagcgcagtgggtccggcgttacctttggctagc
atagttaataaaataaagataaatatcactaagaatacgagtagtaatagtcataatagt
gcctccaacaccacgacaacggactcgcaagtctcggccataagcgtcatcggtggatca
ggagcagctggcggtgcatccggagcaggagacgctgtccagcaggtgaacgccattcaa
accatttccaccattccagtgctgtgcggcggcaatacgtttgtgcccaagattgcgacc
agcacgccctccaacgtaatcaattcgatctcggtaattggcagcacttacggcgcgagc
agcagcagcaatggcagccgaagcacttccaccgcatcctccacaccaggtgcttcggcg
gagacgggcagcctgaagtcgcccactccgccgctcgccacagttgatccggatccggag
cccgtcgtggaacaaaagccggcgctgcggaacgccgcgctgaagcggacgaagaaggtg
cataacggcatcgaaacgtcgggcctgtgctcgatcatgtaa
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