Dinoroseobacter shibae: Dshi_0850
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Entry
Dshi_0850 CDS
T00612
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dshi_0850 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsh03019
]
Dshi_0850 (deaD)
03009 Ribosome biogenesis [BR:
dsh03009
]
Dshi_0850 (deaD)
Enzymes [BR:
dsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dshi_0850 (deaD)
Messenger RNA biogenesis [BR:
dsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dshi_0850 (deaD)
Ribosome biogenesis [BR:
dsh03009
]
Prokaryotic type
rRNA helicases
Dshi_0850 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABV92595
RoseoBase:
Dshi_0850
UniProt:
A8LRE5
LinkDB
All DBs
Position
complement(859653..861845)
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AA seq
730 aa
AA seq
DB search
MPPLPAPIAAALADKGYDTLTPVQIAVSDPALVEADLLVSAQTGSGKTVAFGLAIAPTLL
ADAAAFGPAAAPLGLVIAPTRELAMQVRRELEWLYGPAGAQITSCVGGMDARDERRALGR
GAHVVVATPGRLRDHIERGNIDLDAVRAVVLDEADEMLDLGFREDLEFILGAAPSERRTL
MFSATVPPAIASLAQLYQKDARRISTRAETRQHADIAYRAMVVGPRDEENAIINVLRYYE
AANAIVFCNTRAMVNRLTTRFSNRGFQVVALSGELTQSERTHALQAMRDGRAQVCVATDV
AARGIDLPNLELVVHAELPSSSDTLLHRSGRTGRAGRKGVSAVIVPVKFRKKAERLLKWA
KVTPDWVSPPSAEDVRAQDAARLLEDPAWETPVAEGEAEMVARLVEAFSPEQLAAAVLRA
GSAQRSAPEEISAGDMTPTPRVPFGPSAWFTLSVGRASRAEPRWILPMLCRVGGFDRDEI
GAIRIQQDETFVEIKEAAVPDTLQGSEASITLEDGAVLSRLAEAPDLSQRDGSGPARKPR
EGRGPVSSTRPSAAGRKPRAPRPAPEATRPEPAPAPASSQANDAPPARKPRHKDKPPASK
GATPDGPKPPKAKPRSADRDRPKDRAPYSPKGGKAGGPRDDKGKPRVKDRKPPRPDAAAA
VEEVAPRRSNAASDPSQRLGPDGKPLRARGKGAAKPAGKPGAKPGGKPGRRKTFASKGPD
ATPRWKKPKR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccctgcccgcgcccattgccgcggcgctggccgacaagggctacgataccctg
acgccagtccagattgccgtctccgacccggcgctggtggaggccgacctgctggtctcg
gcccagaccgggtcgggcaagaccgttgccttcgggctcgccatcgcgcctacgctgctg
gccgacgcggccgcgttcggccccgccgcggccccccttggcctcgtcatcgcgcccacg
cgcgagttggccatgcaggtccggcgggagcttgagtggctctacggcccggcgggcgcc
cagatcacctcctgcgtcggcggcatggatgcaagggacgagcggcgcgccctgggccgc
ggcgcccacgtggtcgtggccacccctggtcgtctgcgcgaccatatcgagcgcggtaat
atcgacctcgacgccgtgcgcgccgtggtgctggacgaagccgacgagatgctggacctg
ggcttccgcgaggacctggaattcatcctcggcgcagccccgtcggagcggcgcaccttg
atgttctccgccacggtgccgcccgcgattgccagcctcgcccagctctaccagaaggac
gcgcgccggatcagcacccgtgccgagacccggcagcatgcggacatcgcctaccgcgcc
atggtggtcgggccacgcgacgaggaaaacgcgatcatcaacgtgttgcgctactatgag
gcggcgaatgccatcgtgttctgcaacacccgcgccatggtgaatcggctgaccacccgg
ttctccaaccgcgggttccaggtcgtggcgctctcgggcgagctgacccagtccgagcgc
acccatgccctgcaggcgatgcgggacgggcgcgcgcaggtctgcgtggccacagatgtg
gccgcccgcgggatcgacctgcccaatctcgaactcgtcgtccatgcggaactgcccagc
agttccgacaccctgttgcaccgctcgggccgcacgggccgggccgggcgcaagggcgtc
agcgcggtgatcgtgccggtgaaattccgcaagaaggccgagaggctgctgaaatgggcc
aaggtcactcccgactgggtcagcccgcccagcgccgaggatgtccgcgcccaggatgcc
gcccgcctgctggaggatcccgcttgggagacccccgtggccgagggcgaggccgagatg
gtcgcgcgcctggtggaggcgttcagcccggagcagctggccgcagccgtcctgcgcgcc
ggatccgcccaacgctccgcccccgaggaaattagcgcgggcgacatgacccccacgccg
cgcgtgcccttcgggccgagtgcgtggttcaccctgtcggtgggccgcgccagccgcgcg
gagccgcgctggatcctgccgatgctctgccgggtgggcggtttcgaccgtgacgagatc
ggcgcgatccgcatccagcaggatgagaccttcgtcgagatcaaggaggccgcggtcccc
gacaccctgcaggggtcggaggcctcgatcacgctggaggatggcgcggtgctcagccgt
ctcgccgaggcgcccgacctgtcgcaacgggatggctccggccccgcgcgcaagccccgg
gaggggcgcggcccggtgtccagcacccggccttcggcggcgggacgcaaaccccgcgcc
ccgcgcccggcccccgaggccacgcgccccgaaccggcccccgcgcccgcctcgagccag
gccaacgacgcccccccggcgcgcaagccgcgtcacaaggacaagccgcccgcgtcgaaa
ggcgcgacacccgacggcccgaaaccgccaaaggccaagcccagatccgccgaccgggac
cggcccaaggatcgcgcgccctacagccccaagggcggcaaggcgggtgggccgcgcgac
gacaagggcaaaccgcgcgtcaaggatcgcaagcccccgcgtccggacgcagccgccgcg
gtcgaggaggtcgccccgcgccggtccaacgccgcgagcgacccgtcccagcggctcggg
cccgatggcaagcccctgcgcgcacgcggcaagggcgccgcgaagccggccggcaaaccg
ggcgcgaaacctggcggcaagcccggccggcgcaagaccttcgccagcaagggcccggac
gccacgccccggtggaaaaagcccaagcgctaa
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