Diprion similis: 124411602
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Entry
124411602 CDS
T08947
Name
(RefSeq) general transcription factor IIH subunit 4 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
dsm
Diprion similis
Pathway
dsm03022
Basal transcription factors
dsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124411602
09124 Replication and repair
03420 Nucleotide excision repair
124411602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsm03021
]
124411602
03400 DNA repair and recombination proteins [BR:
dsm03400
]
124411602
Transcription machinery [BR:
dsm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124411602
DNA repair and recombination proteins [BR:
dsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124411602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
124411602
NCBI-ProteinID:
XP_046746779
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Position
10:12413126..12416056
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AA seq
467 aa
AA seq
DB search
MSNTISGKNLLRPTGLQCKDLHEYLKTRPPETLNKLYHNPPICLAVFRELPEIARHYVMR
LLFVEQPVPQAVIASWCSKLHTDEHQKVVKILNELNIWKEASIPGGLPGWILNSTLKKNL
KVVLLGGGKPWTMSNQLETDNKPRDVAFLDTYALERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKRDEEDGSPVITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVVCLTFLF
QLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGQNKPL
SSDLEKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKS
GITAEQIVGYLQQHAHPKMIALGPPTLPPTIVDQIKLWENERNRFVFSEGVLYSQFLSQT
DFEVLRDHALTTQVLIWQSERKRTMVVTKAGHDDVKKFWKRYSKGSS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacacgataagtggtaagaatttattgcgtccaactggactgcagtgcaaggat
cttcacgaatatctaaaaactcggccgccagaaactctgaataaactgtatcacaaccct
ccgatttgtctggccgtttttcgcgaattgcctgaaatagcgaggcattatgttatgcga
ttgctgttcgttgaacagcccgtacctcaagcagtcatagcttcgtggtgttcaaagtta
cataccgacgagcaccagaaagttgtcaaaattctcaatgagctcaatatctggaaggaa
gcatcaatacccggtggtctaccgggatggattttgaattcaacattgaagaagaatttg
aaagtagttttgctcggtggcggtaaaccttggacgatgtcaaatcagctagaaaccgac
aataaaccacgagacgtcgcttttcttgatacgtatgccttagaaaggtgggagtgtgtt
ctccattacatggtcggatcccagcagcaagaaggaatatcggctgatgcggtgagaata
ctgctacatgctggactgatgaaacgtgacgaagaagacggcagtccagtcattacacaa
gcaggatttcagtttctactgctagatacagcgtcccaggtctggtactttattcttcaa
tacttggacacaatagaagccaggggtctggatctggttgtttgtctaacctttttgttt
caattgaacttttcgacattggggaaagattacagtactgaaggtatgtcagagggatta
ttgacatttttgcagcacctcagagaatttggtctggtctatcaaagaaaacgtaaggct
ggaaggttttaccctaccaggctagcactaaacattgccacaggtcaaaataagcctctg
tcaagtgacttagagaaggaaggatacatcgtcgtggaaaccaattacagagtttacgca
tataccaattctaatttacaagtagctctgcttggtctcttttgcgaaatgctttacagg
ttccccaacttggttgtatccattttaacaagagattcagtgaggcaagccctgaagagc
ggcattacagctgaacaaatcgttggttacctacaacagcatgcccatcctaagatgatt
gccttaggaccaccaactttgccccctaccattgtggatcaaatcaagttgtgggaaaac
gaaagaaatagatttgtatttagcgagggcgttctgtatagtcagtttctatcgcagact
gactttgaagtactcagagatcacgcattgaccactcaagttctaatctggcaaagcgaa
agaaagcggacaatggttgtcacaaaagcaggtcatgatgacgtcaaaaagttttggaag
cgttattcgaaaggaagcagttga
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