Dyadobacter sandarakinus: HWI92_19660
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Entry
HWI92_19660 CDS
T07768
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dsn
Dyadobacter sandarakinus
Pathway
dsn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HWI92_19660 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsn03400
]
HWI92_19660 (mfd)
Enzymes [BR:
dsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HWI92_19660 (mfd)
DNA repair and recombination proteins [BR:
dsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HWI92_19660 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QRR02967
LinkDB
All DBs
Position
complement(4794714..4798061)
Genome browser
AA seq
1115 aa
AA seq
DB search
MEVKDLLTLYGGDSYLDLILSQISSKEPESAHVQIKGLVGSLDAVLTAAIQQKKKGPALY
ILSDREEAAYFQNDLQNLLKDAEVLFYPTSYKRPYHYEEVDNANVLMRGEILNKLNVSRS
IPLQVVTYPEALFEKVINKRSLKANTFAVKVGEKLDSAFLTEFLNNYGFEMTDFVFEAGQ
FSVRGGIIDVFSYASEHPFRIELFGDEVDSIRSFDPDTQLSIEVVKQINIVPDIQQKLSH
ETRESFLNFFPSETVLWFKDAELTLEIIEKCMERAEKALEEVTGGGVQIVSNPQDLFETR
RGFLNHIKKFKTVEFGKKSYFKSEAKLPYSSKPQPSFNKDFKRLIDDLSENQSKGYTNVI
VAEQPKQLDRLERIFEDLDPFVKFRPIHISLREGFVDDNLKLACYTDHQIFARFYKYRLK
EKFSKSKAITMKELRSLQPGDFVTHVDYGIGRFAGMERKDVNGKEQEAVRLIYRDNDLLY
VSVHNLHKIAKYTGREGVPPAMSKLGSGEWEAKKSKVKKQLKDIAHELIALYAKRRQTPG
FQFSPDNYMQAELESSFLYEDTPDQATATTSVKDDMEKPNPMDRLVCGDVGFGKTEIAIR
AAFKAVCDSKQVAILVPTTILAMQHYKTFSERLADFPARVGYINRFKTTKEIKDTLKEAA
EGKIDILIGTHRILNKDVIFKDLGLLVIDEEQKFGVKAKDRLKEMRINVDVLTLTATPIP
RTLHFSLMGARDLSVIATPPPNRQPVTTEVHTFSEEFIRDAISYEVQRGGQVFFVHNRVN
DIESIANIIMRLVPDVRIGVAHGQMDGDKLEKVMVKFIEGEFDILVSTNIIESGIDIANA
NTIIINSAHMFGLSDLHQMRGRVGRSNRKAFCYLLTPTASTLASDSRKRLQTLEEFSELG
DGFKVAMRDLDIRGAGNLLGAEQSGFVNDLGYELYHKMLDEAVQELKNNEFKDLFATALG
LPKNLVSECQIETDFATLIPDNYVKNISERLSLYTRLDNIETEEDLGKFEQEILDRFGPV
PVEVQDLLKTVRLRWEAETLHFEKLTLKSNTMKGYFVVSQNDDFFQSAKFGQVIDYIKKH
PREISLKDQKGKLILICEDVKSIEQARNILMEITR
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
ttggaagttaaagacctattgaccttatacggaggggacagctaccttgacctgatcctt
tcccagatatcctcgaaggagccggagtcagcacatgttcagatcaagggtttggtgggc
agcctcgatgccgttcttacagctgctatccagcagaagaaaaaaggccctgccctgtac
attctgagcgaccgggaggaagctgcttattttcagaatgatcttcagaacctgctgaaa
gatgctgaagtactcttttatcccacatcctacaagcggccgtaccattatgaggaggtg
gacaatgccaatgtactcatgcggggagaaatcctcaacaagctgaatgtcagccggtca
atccctcttcaggttgtgacctacccggaagcattgtttgagaaggtgatcaacaaacgc
tcgctgaaagccaatacatttgccgtgaaggtgggagaaaagctggatagtgcgtttttg
accgagttcctgaacaattacggatttgagatgaccgactttgtttttgaagcaggtcag
ttttcggtccggggcggtattattgacgtattttcctatgccagcgagcatcctttccgg
atcgagctgttcggggacgaagtagatagtatccgctcgtttgatccggatacgcagctt
tccattgaggtcgtcaaacagatcaatattgtacccgatattcagcagaagctttcccac
gaaacacgcgaatcgttcctgaacttcttcccgtcggaaacggtgctctggttcaaagac
gcagagcttaccctggaaatcattgagaaatgcatggaaagagctgaaaaggccctggaa
gaagtgaccggaggcggcgtgcagatcgtgtctaatccgcaggaccttttcgaaacacgg
cgcgggtttttaaatcatatcaaaaaattcaagacggttgagtttggtaaaaagtcttac
tttaagtcagaagccaagctgccgtactcctccaagccgcagccatccttcaacaaggat
tttaaacgcctgattgatgatctttcagaaaaccagtccaaaggatataccaatgtgatt
gtggcggagcagcccaagcagctcgatcggcttgaacggatttttgaagaccttgatccg
tttgtgaaatttcggccgatccacatttcattgcgggaaggttttgttgacgataacctg
aaacttgcctgctacacagatcaccagatttttgcgcgtttttacaaataccgcctcaaa
gaaaaattcagcaaatccaaggcgattaccatgaaggaactgcgctctctgcagccaggc
gactttgtaacacacgtagactatggcataggccggtttgcgggtatggagcggaaagat
gtaaacggcaaggagcaggaggcggtcaggctgatttaccgggataatgacctgctgtat
gtgagtgtgcataacctgcataaaattgctaaatataccggtcgcgagggtgttcccccg
gctatgagcaagcttgggtccggcgagtgggaagctaagaaatcgaaggttaaaaagcag
cttaaagacattgcgcacgagctgattgcattatacgcaaaacgccggcagaccccgggc
tttcagttttcacccgacaattacatgcaggctgagctggaatcgtcgtttttgtacgaa
gacacacccgaccaggctacggctacgaccagcgtgaaggatgatatggaaaagcctaac
cctatggacaggctggtgtgcggggatgttggttttggtaaaacagaaattgcgatccgt
gccgcattcaaggccgtgtgcgacagcaagcaggtggcaatacttgtacctactacaatc
ctcgcaatgcagcattacaaaacattcagcgagcggcttgctgactttccggcgcgggta
ggctatatcaaccgtttcaagacaaccaaagaaatcaaggatacactcaaagaagctgcg
gagggtaaaattgatattttgatcggtacccaccgcattctcaataaggatgtaattttc
aaggacctgggcttactggtaattgacgaggagcagaagtttggtgtaaaagccaaggac
cggcttaaagaaatgcggatcaacgtagacgtactgacgttgacagccaccccgatcccg
cgtacgctgcatttttcactgatgggcgcccgcgacctttcggtaattgccacacctccg
cccaaccgccagcctgttaccaccgaggtacatacattcagtgaagaatttatccgtgat
gcaatcagctacgaagttcagcgcggcggtcaggttttctttgtgcataacagagtcaat
gacattgaatccattgccaatatcatcatgcgcctcgtaccagacgtgcggatcggagtt
gctcatgggcagatggatggggacaagctcgaaaaagtaatggttaaattcattgagggt
gaatttgacattctggtttcgaccaacatcatcgagtccgggattgatattgcaaatgcc
aatacgatcatcatcaactctgcgcatatgttcggcctctctgaccttcaccagatgcgt
ggccgtgtgggacgttccaaccggaaggcattctgctacctgctgactcccacggcatcg
accctggcgagtgattcccgcaagcgccttcagacgctggaagagttttcggagctgggc
gatggttttaaggtggccatgcgtgaccttgatatccggggagcaggcaatctgcttggt
gccgagcagagcggatttgtaaatgacctgggctatgagctttaccataaaatgctggac
gaagctgtacaggaactgaaaaataatgagttcaaggacctgtttgcaactgccctgggc
ttacctaaaaacctggtatcggagtgccagatcgagaccgattttgcaacattgatcccc
gataattatgttaaaaatatttcagaaaggctgtcgttatatacccgccttgacaatatt
gagacagaagaggatctgggtaaatttgagcaggagatcctggaccgtttcgggcctgtg
ccggtagaggtacaggacttgctgaaaacggtccgtttacgctgggaagcagagactttg
cactttgaaaaactgactttgaagagcaataccatgaaaggctacttcgttgtttcgcag
aacgacgatttcttccagtcggctaagttcgggcaggtaatcgattacattaaaaagcac
ccgcgggaaatttcattgaaagatcagaaaggcaagctcattttgatttgtgaagatgta
aaaagcattgagcaggcccgtaatattttgatggaaataacccggtag
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