Dipodomys spectabilis (banner-tailed kangaroo rat): 122096488
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Entry
122096488 CDS
T07891
Symbol
Ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122096488 (Ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122096488 (Ddx46)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122096488 (Ddx46)
Spliceosome [BR:
dsp03041
]
Complex A
U2 snRNP components
U2 related factors
122096488 (Ddx46)
Complex B
122096488 (Ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
FAM176
Motif
Other DBs
NCBI-GeneID:
122096488
NCBI-ProteinID:
XP_042522979
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKAENRSRS
KEKTEGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGAEMEDEELDPLDAYMEEVKEEVK
KFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVADSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQ
LAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRIS
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTNKGRYKVL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtcgcgccactatcgaaaacggtcagcatcacggggacgctctggaagt
cgatctagaagtcgttcgccctcggacaaaagaagtaaacgtggagatgacagacggtct
agaagcagagatagagatagaaggagagagaggtctcggagcagggataaacgaagatct
cggtcgagggacaggaagcgtctgaggcgttccagaagtagagagagagaccgaagccga
gaaagaagaagatctagaagccgagataggagacggtcaaggagcagaagccggggtcgg
cgatcccgatcctccagtcctggcaataaaagcaagaaagctgagaacaggtctagatct
aaagagaaaacagaaggtggagagagttcgaaagagaagaaaaaagacaaggatgacaaa
gaggatgaaaaggaaaaagatgctggtaattttgaccagaataagctggaagaagaaatg
agaaagcgaaaggaaagagttgaaaagtggagagaagaacagcggaaaaaggccatggaa
aacattggggaacttaagaaggagattgaagagatgaaacaggggaaaaagtggagttta
gaagatgatgatgatgatgaagatgatcccgctgaagctgaaaaggaaggcgcagagatg
gaggatgaggagttagatccactagatgcttacatggaagaagtgaaagaggaagtaaag
aagttcaacatgagaagtgtgaaaggtggcggggggaacgaaaagaagtctgggccaaca
gttacaaaagtagtcactgttgtaacaaccaaaaaagcagttgcagattcagataagaag
aaaggcgagctgatggagaatgaccaggacgccatggagtattcttccgaagaggaagaa
gttgatcttcagacggcccttacaggatatcagacaaaacagagaaaacttctggaacca
gttgatcatggaaaaattgaatatgaaccattcaggaaaaacttttatgttgaagttccg
gaactagcaaaaatgtcccaagaggaggtgaatgtatttcgattggaaatggaaggcatt
acagttaaaggaaaaggttgccccaaaccaattaagtcctgggtccagtgtgggatttcc
atgaagatcttaaattccctgaaaaagcatggatatgaaaagccaacaccaattcagacc
caagcgattcctgctataatgtctggacgagatttgattggcattgccaagacgggaagt
ggaaagaccattgcttttctcttgcccatgttcagacacatcatggatcagagatcatta
gaagaaggcgaggggccaatagctgtcatcatgactccaactcgagaactggctttacag
attactaaggaatgtaagaagttttccaagactttaggacttagagtggtctgtgtttat
ggaggaacaggaatcagtgagcagattgctgagctgaaaagaggtgctgaaattattgtt
tgcacacctggtcgaatgattgacatgctagcagctaacagtggtcgggtcacgaatctt
cgaagagtgacgtatgttgttttagatgaagcagatagaatgtttgacatgggctttgaa
ccacaggtcatgcgcatcgtggacaatgtccgtcctgatcggcagacagttatgttttca
gctacttttcccagggctatggaggccttggcccgcagaatccttagtaaacccattgaa
gtacaggttgggggtcgaagcgtggtttgctcggatgtggagcagcaagtgattgtgatt
gaagaagaaaagaaattcttgaagttacttgagcttctgggccattatcaagaatcagga
tctgtcattatatttgtggataagcaggaacatgctgatggtcttctgaaggatttaatg
agagcatcttatccttgcatgtctcttcatggagggatcgatcaatatgacagagatagc
ataataaatgactttaagaatggaacctgcaagcttctcgtagccacctctgttgctgcc
cgaggtctggatgtgaaacatctcattcttgtcgtcaattacagttgccccaaccattat
gaggattatgtgcacagagcaggacggactgggagagcaggcaacaaaggctatgcatat
acttttatcacagaagaccaagctcgctatgctggtgacataattaaagctcttgaacta
tctgggactgcagtgcctcctgatctagagaaactttggagtgatttcaaagatcaacag
aaagctgaaggaaaaataattaaaaagagtagtgggttctctggtaagggattcaagttt
gatgaaacagaacaagctttggcgaatgagaggaagaagttgcagaaggcagctcttggt
ctgcaggattcagatgatgaggatgctgcggttgatattgatgaacaaattgaaagcatg
tttaattcaaagaagagagtgaaagatatggctgctcctggaacgtccagtgttcctgct
ccaactgcaggaaatgctgagaaattggaaatcgctaagagactggctcttagaatcaat
gctcagaagaatttgggcatcgagtctcaggtagatgtgatgcagcaggccaccaatgcg
atcctaagaggtggcaccatcctggctcctactgtgtccgccaaaaccattgcagagcaa
cttgccgagaagatcaatgccaagctcaattatgtgcctttagagaaacaagaagaagag
cggcaggatggaggacagaatgaatctttcaagagatatgaggaagaattagagatcaat
gacttcccacagacggctcggtggaaagttacctccaaggaagctctacagagaatcagt
gaatattccgaagctgcaatcacaatccgaggcacatacttccctcctggcaaggagccc
aaggaaggagagcggaaaatttacctggcaattgaaagtgccaatgaactggctgtgcag
aaagcaaaggcagaaatcaccaggctcataaaagaagaactgatccgactgcaaaattca
taccaaccaacaaataaaggaagatacaaagtcttatga
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integrated database retrieval system
