KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122125798
Entry
122125798         CDS       T07891                                 
Symbol
Lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03030  DNA replication
dsp03410  Base excision repair
dsp03420  Nucleotide excision repair
dsp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122125798 (Lig1)
   03410 Base excision repair
    122125798 (Lig1)
   03420 Nucleotide excision repair
    122125798 (Lig1)
   03430 Mismatch repair
    122125798 (Lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dsp03032]
    122125798 (Lig1)
   03400 DNA repair and recombination proteins [BR:dsp03400]
    122125798 (Lig1)
Enzymes [BR:dsp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     122125798 (Lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     122125798 (Lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     122125798 (Lig1)
DNA replication proteins [BR:dsp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    122125798 (Lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     122125798 (Lig1)
DNA repair and recombination proteins [BR:dsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     122125798 (Lig1)
   NER (nucleotide excision repair)
    Other NER factors
     122125798 (Lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     122125798 (Lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR
Other DBs
NCBI-GeneID: 122125798
NCBI-ProteinID: XP_042556341
LinkDB
Position
Unknown
AA seq 920 aa
MQRTIRSFFQPANEGKVKKPEKEATTKGSRETEPPAPPKAALKERNGVVSPSDSPVKRPA
KKAARVLSSEGEEEDEALDTHKGQKPVPASPKSSPSSSGTSPENSPSAPDTSPMDTSPSG
FPKRRTARKQLPKRTIQDVLEDQSEEDKDREAKKRKEGDEAETPRDSPAQTNVVKPKGEE
EEDQPATPPKSPEARTPTKRESSPAPRVAGKRKWPEEEKQHKPLPKAPRTLSSFFTPRKP
VVKAEVKGEESGAAKKEAKGPLDPMSYNPGKNNYHPVEDACWNPGQKVPFLAVARTFEKI
EEVSARLRMVETLSNFLRSVVALSPPDLLPVLYLSLSRLGPPQQGLELGVGDGVLLKAVA
QATGRQLESIRAEAAEKGDVGLVAESSRSTQRLMLPPPPLSAAGVFNKFRDIAGLTGSAS
TAKKIDIIKGLFVACRHSEARYIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPPA
VVDAGKGRTAEARKTWLEEQALVLKQTFCEVPDLDRIVPVLLEHGLERLPEHCKLSPGVP
LKPMLAHPTRGVAEVLKRFDEAAFTCEYKYDGQRAQIHFEEGGEVKIFSRNQEDNTGRYP
DIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVEASEIQVQVCLYA
FDLIYLNGESLVREPLSWRRQLLRDNFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSC
EGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFL
LAAYDEDSEELQAICKLGTGFSDEELDAHYQSLRELVLPTPRPYVRADGAVAPDHWLDPR
AVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFVRVREDKEPEQATTSTQVAALYRK
QSQIQNQLGTDSDSDPEGFY
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgcaacgaactatcaggtcatttttccaacctgccaacgagggtaaagtgaagaagcct
gaaaaagaggctacaaccaaaggcagcagagagacggagccccctgcgcctcctaaggcg
gcactgaaggagcggaatggagtggtctctccaagtgactctccagtgaagaggccagca
aagaaagcagcccgggttctgagcagcgaaggggaggaggaagatgaagccctcgatacc
cacaaaggccagaagcctgtgccagcctccccaaagtcctcaccttccagctctggcaca
agtcccgagaacagcccttctgccccagatacctcccccatggacacttccccatccgga
ttcccaaagcggcgcacagctcggaagcagctcccaaagcggacaatccaggatgttctg
gaagatcagagtgaggaggacaaggacagagaagccaagaagaggaaggagggagacgaa
gcagagaccccaagagacagccccgcacagaccaatgtggtaaaaccaaaaggagaagag
gaagaggaccagcccgcgacacccccgaagtcccccgaagcccggactccaaccaagaga
gaaagcagccctgcgcccagggtggcgggcaagcggaagtggccggaagaggagaagcag
cacaagccccttcccaaagctccccgcacgctcagcagcttcttcaccccccggaagccc
gtggtcaaggcggaagtgaaaggagaggagtcgggtgctgcgaagaaagaggccaaggga
cccctggacccgatgagctacaatcctggcaagaacaactaccaccccgttgaggacgcc
tgctggaaccctggccagaaggtccctttcctggccgtggcgcggacatttgagaagatc
gaggaggtgtccgctcggctccgcatggtggagacactgagcaacttcctgcgctccgtg
gtggccctgtcaccgccagacctgctccccgtcctctacctcagcctcagccgcctgggg
cctccgcagcagggcctggagctgggcgtcggcgatggcgtcctcctcaaggccgtggcc
caggccacaggccggcagctggagtccatccgtgccgaggcggccgagaaaggcgacgtg
gggctggtggccgagagcagccgcagcacgcagcggctcatgctgcctccgccgccactc
tccgcagctggcgtcttcaacaagttccgcgacatcgccggcctcaccggcagtgcttcc
actgccaagaagatagacatcatcaaaggtctcttcgttgcctgccgccactcggaagcc
cggtacatcgccaggtccctgagtggacggctgcgccttgggctggcggagcaatcggtg
ctggctgccctcgcccaggctgtgagcctcacgcccccaggccaaggattccccccagct
gtggtggatgctgggaagggcaggacggccgaggcccggaagacatggctggaggagcag
gccctggtcctgaagcagaccttctgcgaggtgcccgacctggaccgcattgtaccagtg
ctgctggaacatggcctggagcggctcccggagcactgcaagctgagtccaggagtcccg
ctgaaacccatgctggcccaccccactcgaggtgtcgctgaggtcctgaaacgcttcgat
gaggcagccttcacctgcgagtacaaatatgacgggcagagggcgcagatccacttcgag
gaaggcggggaggtgaagatcttcagcaggaaccaggaggacaacacggggaggtacccc
gacatcatcagccgcatccccaagattaaactcccttcggtcacgtctttcatcctggac
accgaggcggtggcgtgggaccgggaaaagaagcagatccagccattccaggtgctcact
acccgcaaacgcaaggaggtggaagcgtcagagattcaggtgcaagtgtgcttgtacgcc
ttcgacctcatctatctcaatggcgagtccctggtccgggagccgctgtcctggcgccgg
cagttgctccgagacaactttgtggaaacggagggcgagtttgtcttcgccacctcctta
gacaccaaggacacagagcagatcgccgagttcctggagcagtcagtgaaagactcatgc
gagggactcatggtgaagacgctggatgtggatgccacctacgagatcgccaagcgctcg
cacaactggctcaagctgaagaaggactacctggatggtgtgggggacaccctggacctc
gtggtgattggtgcctacttgggccgggggaagcgggccggccgctatggaggcttcctg
ctggctgcctacgacgaggacagcgaggagctgcaggccatatgcaagcttgggaccggc
ttcagcgacgaagagctggacgcacactaccagagcctccgggagctggttctgcccacc
ccgcgcccctacgtgcgcgctgacggcgccgtggcccctgaccactggctggacccccgc
gccgtgtgggaggtgaagtgtgcggacctctccctctcccccatctaccctgccgcccga
ggcctggtggacagcgaaaagggcatctccctgcgcttccctcgcttcgtccgcgtccgc
gaagacaaggagcctgagcaggccaccaccagcacccaggtggccgccttgtaccgaaag
cagagtcagatccagaaccagctaggcaccgactcggactctgatcctgagggtttctac
tga

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