Dipodomys spectabilis (banner-tailed kangaroo rat): 122126110
Help
Entry
122126110 CDS
T07891
Symbol
Sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122126110 (Sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122126110 (Sf3b3)
03041 Spliceosome [BR:
dsp03041
]
122126110 (Sf3b3)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122126110 (Sf3b3)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122126110 (Sf3b3)
Spliceosome [BR:
dsp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122126110 (Sf3b3)
Complex B
122126110 (Sf3b3)
Complex C
U2 SnRNP specific factors
122126110 (Sf3b3)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
122126110 (Sf3b3)
TFTC complex
122126110 (Sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
122126110
NCBI-ProteinID:
XP_042556618
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaatttaaccttgcagcgagctactggcatcagctttgccattcatggc
aacttctctggaaccaaacaacaggaaattgttgtttcccgtggaaagatcttggaactt
cttcgtccagacccgaacactggcaaagtacatactcttctcactgtggaagtgttcggt
gtaatacgatcactcatggcctttagactgacaggtggcaccaaagactacattgtagtt
ggcagtgactcaggtcggattgttatcttggaataccagccatccaagaatatgtttgag
aaaattcaccaagaaacttttggcaaaagtggatgtcgccgcattgttccaggccagttc
ttggctgtggatccaaaaggacgggctgttatgattagtgccattgagaaacagaaattg
gtgtatatcttgaacagagatgcagcagcccggcttaccatctcatcacccttggaggcc
cacaaagcgaacactttagtatatcatgtagttggagtagatgtgggttttgaaaaccca
atgtttgcctgtctggaaatggattatgaggaagcagacaatgatccaacaggggaagca
gcagctaatacccaacagacacttactttctatgagttggaccttggtttaaatcatgtg
gtccgaaaatatagtgaacccctggaggaacatgggaacttccttattacagttccagga
gggtcagatggtccgagtggagtgttgatttgctctgaaaattatatcacctacaagaac
tttggtgatcaaccagatatccgatgtccaattcccagaagacggaatgacctggatgac
cctgagagaggaatgatttttgtctgctctgctacccataagaccaagtcgatgtttttc
tttttggcacaaactgagcagggagacatctttaaaataactttggagacagatgaagat
atggtaactgagatacggctgaaatattttgatactgtgcctgttgcagctgccatgtgt
gtgcttaaaacaggcttcctttttgtggcatcagaatttggaaatcattacttatatcaa
attgcacatcttggagatgatgatgaagaacctgaattttcatctgctatgcctctggaa
gaaggagacacattcttttttcagccaagacctctcaaaaatcttgttttggtagatgaa
ttggacagcctctctcccattttgttttgccagatagctgatttggctaatgaagacact
ccccagctgtatgttgcttgtggcaggggaccccggtcatctctgagagtcttgaggcat
ggacttgaggtatcagaaatggctgtttctgaactacctggtaaccccaatgctgtctgg
acagtacgtcggcacattgaagatgagtttgatgcctacattattgtttctttcgtgaat
gccacccttgtactttctattggagagactgtagaagaagtgactgactctgggttcctg
ggtaccaccccaaccttgtcttgctccttgttaggagatgatgctttggtgcaggtgtat
ccagatggcattcggcacatacgagcagacaagagagtcaatgagtggaagactcctggg
aagaaaacgattgtaaaatgtgcagtgaaccagcgacaagtagtgattgctctgacagga
ggagagctggtctattttgagatggacccctcaggacagttgaatgagtacacagagcgg
aaggagatgtcagcagatgtggtgtgcatgagtctggccaacgtacctcctggagagcag
cggtctcgcttcctggctgtaggtctggtggacaacactgtcagaatcatctccctggat
ccctcagactgtttgcaacctttgagtatgcaggctctcccagcccaacctgagtccttg
tgtattgtggaaatgggtggaactgagaagcaggatgagctgggtgaaagaggttctatt
ggtttcctgtatctgaacattgggctgcagaatggtgtgctgctgagaactgtcctagac
cctgtcactggggacttgtctgacacccgcactaggtacctagggtctcgtcctgtgaag
ctcttccgggtccgaatgcaaggccaggaggcagtgttggccatgtcaagccgctcgtgg
ttgagctattcttaccaatctcgctttcatctcacacccctctcttatgagaccttggag
tttgcatctggctttgcttctgaacagtgtcctgagggcattgtggccatttccactaac
actctgaggattttggcattggagaagctaggtgctgtcttcaatcaagtagccttcccg
ttgcagtacacacccaggaaatttgtcatccatcctgaaagtaacaaccttataatcatt
gagacagaccacaatgcctatactgaggccacaaaagctcagagaaagcagcagatggca
gaggaaatggtggaagcagcaggggaagatgagcgggagctagctgcagagatggcagca
gcatttctcaatgaaaacctccctgaatccatttttggagctcccaaggctggcaatggg
cagtgggcctctgtgatccgagtgatgaatcctattcagggaaacacactggaccttgtt
cagctggagcaaaatgaggctgcttttagtgtggctgtgtgcaggttctccaacactggt
gaagactggtatgtgctggtaggcgtggccaaggacctgattctgaatcctcgatctgtg
gcagggggctttgtatatacatacaagcttgtgaacaatggggaaaaactagagtttttg
cataagacgccagtggaggaagtccctgctgccattgccccattccagggaagggtgttg
attggtgtgggaaagcttttgagagtctatgacctggggaagaagaagttactccgaaag
tgtgagaataagcatattgctaactacatatctgggatccagactattggacacagggta
atcgtatctgacgtccaagaaagttttatctgggttcgctacaagcgtaatgaaaaccag
ctcatcatctttgctgatgacacctacccccgatgggtcactacagctagtctccttgac
tatgacactgtggctggggcagacaagtttggcaacatttgtgtggtaaggctcccccct
aataccaatgatgaagtagacgaggatcccacaggaaacaaagccctgtgggaccggggc
ttgctcaatggtgcctcacagaaggcagaggtgattatgaactaccatgttggagagacc
gtgctatcactacagaagaccacgttgatcccaggaggctcagaatcacttgtttatacc
accttgtcaggtggaattgggatccttgtcccattcacatcccatgaggaccatgacttc
tttcaacatgtagaaatgcaccttcggtctgagcatcctcctctctgtgggcgagaccac
ctcagctttcgttcctattacttccctgttaagaatgtgattgatggagacctctgtgag
cagttcaactccatggagcctaataagcaaaagaacgtgtctgaagaattggaccgaacc
cctccagaagtatccaagaaacttgaggatatccggacccgttatgctttctga
DBGET
integrated database retrieval system
