KEGG   Dichomitus squalens: DICSQDRAFT_136334
Entry
DICSQDRAFT_136334 CDS       T03133                                 
Name
(RefSeq) hypothetical protein
  KO
K14328  regulator of nonsense transcripts 3
Organism
dsq  Dichomitus squalens
Pathway
dsq03013  Nucleocytoplasmic transport
dsq03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    DICSQDRAFT_136334
   03015 mRNA surveillance pathway
    DICSQDRAFT_136334
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsq03019]
    DICSQDRAFT_136334
Messenger RNA biogenesis [BR:dsq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     DICSQDRAFT_136334
   mRNA cycle factors
    P-body specific factors
     DICSQDRAFT_136334
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 18835461
NCBI-ProteinID: XP_007365530
JGI: 136334
UniProt: R7T058
LinkDB
Position
Unknown
AA seq 486 aa
MIDTARPSKAKGKDKEKEKKSKSSSGGQKSQTERLKTVVRRLPPNLPEDIFWQSVGKWVT
DETVTWKAYYQGKFKTRLNKENIPSRAYIAFRDEEILATFSREYDGHLFRDKNGNESIAI
VEFAPFQKVPNEKKKADSRAGTIEKDEDYISFLESLKEVSSKPFDLDTLETLIASTQPAP
LPTTTPLLEALKAEKSAQKDKESILRNHAHYKDPAALAAAAAATKKGDKKKDAAGGGKDK
MADSGASKKAAKKAAAAAKAAAHQQQGQAQAGASKDVKATAATSANKQGASKPPKAPRER
KGTASGPSVSSSASTSGSAAAPAPASAAPFAAEDYAGIPMRCACPVLSIASRQFEAALSG
AGVERKSRRERDKDKDKDKDGAVASTTSSTVVAEAPPAPRQKEEKRERGPRGGGVPTGIL
QRDAAPPKILARPAQGQTTSEGSAPASAASVALGATDGGDPGTPGGGRGRGRGRGRGRGR
GAPPQG
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgatcgacacagctaggccttccaaggccaaagggaaggataaagagaaagaaaagaaa
tctaagtcctctagcggaggtcagaagtcgcagaccgaacgcctcaagaccgtggtccgt
cggctaccgcccaacctccctgaggacatattctggcagagcgtcgggaaatgggtcaca
gacgagactgttacgtggaaggcatactaccaaggaaagttcaagacacggttgaacaag
gagaacatcccgtcgcgcgcatatatcgcattcagggatgaggagatcctcgcaacattc
agcagggagtatgacgggcatttgttcagggacaagaacggcaacgagtccatcgcgata
gtcgaatttgcaccatttcagaaagtgcccaatgagaagaagaaggcagacagcagggca
gggacgatcgagaaagacgaggactacatctcgtttttggaatcactcaaggaggtttct
tcgaaacctttcgatttagatacccttgaaacattgatcgcttcgacccagcctgcaccc
ctcccaacgactaccccgctcctcgaagcactcaaagctgagaagtcggctcagaaagac
aaagaatccatcctccgcaaccatgcgcactacaaggacccagcggctctagcggcagca
gcggcggctaccaagaagggagataagaagaaggatgctgctgggggcgggaaggacaag
atggcggattctggtgcgagcaagaaggctgcgaagaaggctgcggccgcggcgaaagcg
gcggcgcatcagcagcagggccaagcacaggcgggcgcgagcaaggacgtcaaggccacc
gccgcgacatccgcaaataagcagggcgcatcgaagccaccgaaggcgcctcgggagcgc
aaggggaccgcgtctggaccttcagtgtcgtcgagcgcgtcgacgagtgggtcggctgct
gccccggcacctgcctccgccgctccctttgctgctgaggactatgccgggattcccatg
cgttgcgcatgcccagttcttagcatcgcctcgcgacagttcgaggctgcgcttagcggg
gcgggcgtcgagcgcaagtcgcgtcgcgaacgcgacaaagacaaggacaaggacaaggat
ggtgccgtggcatcgacgaccagctccacagttgtcgcggaagcgcctcctgcgcccagg
cagaaggaggaaaaacgcgagcgtggtccccgcggtggcggcgtcccgaccgggatcctg
cagcgcgatgcggccccgccaaagatattggcccgtcctgctcagggacagacaacgagc
gagggctcagcccctgcgtctgctgcgtctgtagccctgggtgcgactgatggcggagat
cctggcactcctggcggagggcggggtcgcggtagaggcaggggccggggtcgagggcga
ggtgctcctccgcaagggtga

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