Dichomitus squalens: DICSQDRAFT_48618 Help Entry DICSQDRAFT_48618  CDS       T03133                                  Name (RefSeq) ATP dependent helicase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism dsq  Dichomitus squalens Pathway dsq03013   Nucleocytoplasmic transport dsq03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:dsq00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     DICSQDRAFT_48618    03015 mRNA surveillance pathway     DICSQDRAFT_48618  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:dsq03019]     DICSQDRAFT_48618 Enzymes [BR:dsq01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      DICSQDRAFT_48618     5.6.2.5  RNA 5'-3' helicase      DICSQDRAFT_48618 Messenger RNA biogenesis [BR:dsq03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      DICSQDRAFT_48618    mRNA cycle factors     Common to processing body (P body) and stress granule      DICSQDRAFT_48618 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase UvrD-helicase Viral_helicase1 DEAD Helicase_RecD Ribosomal_S13_N PIF1 AAA_22 AAA_16 nSTAND3 AAA_25 SRP54 PhoH Ribosomal_S27e ATPase AAA_10 UvrD_C_2 Motif Other DBs NCBI-GeneID:  18842122 NCBI-ProteinID:  XP_007361467 JGI:  48618 LinkDB All DBs Position Unknown AA seq 1060 aa AA seqDB search MSVVDDTSSVYTANTTNASRVPVDLESLSITDDRSFTSSPNGHSHAVHNKTPSRNAIDED FDAVLDDLKDEGQVDLPPHACSYCGIHSPASVVKCLICSKWFCNSRGNTSASHIVNHLVR AKHKEVILHSESPLGETIPECYNCGSKNVFMLGFIPAKSDTVVVLLCRQPCAAVSKDISW NPALWAPLIDDRSFLSWLVKPPSEQEQLRSRQISFQQINRLEDLWRENANATLDDLEKPG VDDEPQPVITHYEDAYQYQNIFGPLVKIEADYDKRLKESLTQTDITIRWDLGLNQKRVAW FCLPKLESGEVRLAVGDELRLKYNGGLHKPWEGDGHVIKIPNNVSDEIGLELRRSEGVPT EITHGYTADFVWKSTSFDRMQLAMKTFAVDEKSVSGYIYHKLLGHELEPQVLRTQMPKRF SAPGLPELNHSQMYAVKSVLQKPLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPS NVAVDQLTEKIHATGLKVVRLSAKSREALDSSVSFLTLHQQVANNTTHVELQKLIQLKNE QGELSSNDERKYKALIRQCEKEILGAADVICCTCVGAGDPRLSKLKFRTVLIDEATQAAE PECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAARAGLTQSLFERLVVLGNRPIRLQVQYR MHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWPVPDTPMFFYQNLGQEEISSSGTS FLNRRASNVEKIVTKFFKSGVVPSQIGVITPYEGQRSYIVNYMQFNGSLKKDLYKEIEVA SVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGVVILGNPKVLSKHPL WHYLLTHYKEKNCLVEGPLNNLQPSMIQFSKPRRTLGKAMDQFRRHETSARDYLGNGGMM GDGRRSGTPSRFDASFYRTHDAMSYIPSDVQSLRSQATYSSGLPMFAATGPFGPGAQRQN GVKRSTYGSYASSIISQDAGPAGTDASSVVGSAVGASDRPGGMTYSQSDRLQRRSSFSST TGASDLGSLSQYDYKSQDDGTDLDDMKSQYTGTQSGVTVF NT seq 3183 nt NT seq  +upstreamnt  +downstreamnt atgagtgtagtggacgacacctcttccgtctataccgcaaatacaactaacgcaagccgc gttccggtcgatttggaaagcctctcgattacggatgatcgctcattcacgtcctccccc aacgggcactcgcacgctgtccacaacaagactccaagtcgaaatgctatagatgaggac tttgacgcggtcttggatgacctcaaggacgaaggacaggtagatttgccgccgcatgca tgcagctactgcggcatccactcgcccgcctcagtagtcaagtgtcttatttgctccaag tggttctgcaattccaggggcaacacttccgcatctcacatcgtgaaccacctcgtgcgc gcgaagcacaaggaggttattctccacagcgaaagcccgctcggggagactatccccgag tgctacaactgcggtagcaagaatgtgttcatgcttgggttcattcctgccaagagtgac accgtcgtcgtccttctgtgtcgccaaccctgtgccgcagtttccaaagacatctcctgg aacccggcgctttgggctcctctcatcgacgaccgctcgttcctttcctggctggtaaag cccccgagcgaacaagaacagctcagatcccgccagatttccttccagcaaatcaatagg cttgaagatttgtggcgcgaaaatgctaatgccactcttgacgatctcgagaagcccggt gtagacgacgaaccccagcctgtcatcacgcactatgaagacgcttaccagtatcagaac atcttcgggccgctcgtgaagattgaagctgactatgacaagcggttaaaggaatcgctg acccagaccgatatcaccattcgctgggatctcggtctcaaccagaagcgcgttgcctgg ttctgcttgcccaagcttgagagcggcgaagtccgacttgcggtcggcgacgagctccgg ctcaagtacaacggaggtctgcataaaccttgggagggtgacgggcacgtcatcaagatt ccgaacaatgtatcggacgagattgggctggagttaaggcggtcggaaggcgtcccgacg gagatcacgcatgggtataccgcggatttcgtgtggaaatccacaagctttgacaggatg cagctggcaatgaagacgttcgccgtcgacgaaaagagtgtcagcgggtacatctatcac aaacttctcggacacgagctcgagccgcaggttctccgcactcagatgcctaaacggttc tcagcccctggcctgcccgaacttaaccattcgcagatgtatgccgttaagagcgtcctc cagaagcctctcagtctcatccagggcccgccggggacgggaaaaacggtaacttccgct tctatcgtctaccacctggcgaagatgaatcccggacaagtcctcgtctgcgcgccgtcc aatgtcgccgtcgaccagctgaccgagaagatccacgccacggggttgaaggtcgtgcga ctcagcgccaagtcccgcgaggcactggactcttccgtgtccttcctcactcttcaccag caagttgcaaacaatacgacccacgttgagctgcagaagctcatccagctcaagaatgag cagggcgagctgagctcgaacgatgagcggaagtacaaggcgcttatccgccagtgtgaa aaggagatactcggcgccgctgatgttatctgctgcacttgcgtcggtgctggggaccca cgcctcagcaaactgaagttcaggaccgttctcatcgatgaggctacgcaagcggccgag ccggaatgcatgatccctcttgtactcggttgcaagcaggtagttcttgttggagatcat cagcaactcggacccgtcatcatgaataagaaggcggcacgcgcgggcttgacgcagtcg ctgttcgaacgactcgtcgtccttggaaaccgtcccatacgtttacaagtgcagtaccgc atgcacccgtgcctgtcggagttcccttcgaacatgttctacgaaggcactcttcagaat ggcgttactgcccccgagcggctcaggaagaacgttgacttcccgtggcccgtgcccgac acccccatgttcttctatcagaacctgggtcaggaggagatctcatctagcggaacgtcc ttcctgaacaggcgcgcgtctaatgtcgagaagattgtgaccaagttcttcaagtcgggt gttgtccccagccagatcggtgtcatcacgccgtacgaaggccagcgatcatacatcgtg aactacatgcagttcaacggatcgctgaagaaggacctatacaaggagatagaagttgcg agcgttgacgcgttccaaggtcgagagaaggactacatcatcctgagctgcgtgcggagc aacgagcatcagggaatcggtttcttgaacgacccacggcgcctcaacgtcgcactcacg cgcgcgaagtacggcgtggtgattctgggaaatccgaaggttctatccaagcacccgctt tggcattacctattgacgcactacaaggagaagaactgtctcgtcgaagggccgcttaac aaccttcagccgagcatgatacagttcagcaagccgcggcgtaccctaggcaaggccatg gatcaattccgccgccatgagacgagcgcaagggattatctcggcaatggtggtatgatg ggtgatgggcggagatccgggactcccagccgcttcgatgcgagtttctaccggacccac gatgcaatgagctacattccttccgacgtgcagtcactccgctctcaggcaacgtactct tcggggcttccaatgtttgccgctaccggtccgttcgggccgggagcacaacgccagaat ggcgtgaaacgcagcacgtatgggagctacgcgagttctatcatctctcaagatgctggc cccgcaggaactgacgcttcaagcgtcgtgggcagtgcggtcggcgcatccgatcgccct ggagggatgacgtattcgcaatctgatagattgcaacgtcgctcatccttctcgtcaact actggcgcttcagatctgggcagcttgtcgcagtacgattacaagtctcaggacgacggc accgatctagatgacatgaagtcgcagtacaccggcacgcagagcggcgttaccgtcttc tag

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