Dermacentor silvarum: 119432972
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Entry
119432972 CDS
T07348
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dsv
Dermacentor silvarum
Pathway
dsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119432972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsv03019
]
119432972
03041 Spliceosome [BR:
dsv03041
]
119432972
03009 Ribosome biogenesis [BR:
dsv03009
]
119432972
03016 Transfer RNA biogenesis [BR:
dsv03016
]
119432972
Enzymes [BR:
dsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119432972
Messenger RNA biogenesis [BR:
dsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119432972
Spliceosome [BR:
dsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119432972
Complex C
U4/U6.U5 tri-SnRNP related factors
119432972
Ribosome biogenesis [BR:
dsv03009
]
Eukaryotic type
Pre-60S particles
Helicases
119432972
Transfer RNA biogenesis [BR:
dsv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119432972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
119432972
NCBI-ProteinID:
XP_037556040
EnsemblRapid:
LOC119432972
LinkDB
All DBs
Position
11:complement(86421163..86458499)
Genome browser
AA seq
1031 aa
AA seq
DB search
MDDLFSVFDDAPKSKFLTSTTVKKEDVKNEEPTRDDNGTGDFVQSIIDGKRSLDGNYEEE
PNKKRKTSDIWDDFDPADYLPHVHVHSVEEVEGCVHEVALPEGMEYVPLKRNREGPAARE
YRFILDPFQQEAILCLEHNQSVLVSAHTSAGKTVVAEYAISLAFQEKQRVIYTTPIKALS
NQKFREFTDDFKDVGLMTGDVTINPSASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIH
YMRDKERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEYRPVP
LQHYIFPAGGSGLYLVVDENGNFKEEKFNEAMALLQNAGDAAKGDSALKGRKGGFKGESN
CYKIVKMIMERDYAPVIVFSFSKKECEAYATQIAKLDLTTLKEKKLVMEVFQNAMDSLSE
EDQKLPQVEQVLPLLKRGIAVHHSGLLPILKETIEILFAEGLVKALFATETFAMGLNMPA
RTVLFTNARKFDGKDFRWVTSGEYIQMSGRAGRRGLDDRGIVILMIDEKMSPAAGKDIVK
GLPDPINSAFHLTYNMVLNLMRVEEVNPEYILERSFFQFQNNAAIPVYYQKLQKLQAELE
SFKIPNETEVAAYYKVRQQLASLSRELQAFLTKPQYCVPYLQPGRMVHVNNGTDDFGWGV
VVAYSKKKVVVARGKPGLNDPVVIVDVLLNVSKESAQTKLTSKLTPPKPGEKGEVQVVPL
TIDNITKMSTIRLFFNQDLKSTDNRAAVLKSIKEVEERFPKGIPLVDPFEDLNIKDINMR
EVVKKIEAFENRMYAHPLHSHPDLPKIYAEYEKKMKVAQEIREVKNELKKAKALLQMEEL
KCRKRVLRRLGYSTAADVMEIKGKVACEVSSADELLVTEMIFNNMFNELNAHQATALLSC
LVFQEKSNEMPNLTEELSGPLRQMQDIARRIARVTKDAKLCIDEDTYVNSFKPHLMDVIY
SWSKGATFAQVCRMTDVFEGSIIRCMRRLEELLRQIIQAAKCIGNTELENKFSEAVKLIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctgttcagtgtttttgacgatgcgccgaaatcaaagtttttaacctcaact
acagtgaaaaaggaggacgtaaagaatgaagaaccaacgcgtgatgataatggcaccggc
gactttgtgcaatcgattattgatggaaaacgatctctggatggcaattacgaggaggaa
ccaaacaagaaaaggaagacatcggacatttgggacgactttgaccctgctgactatctg
ccacacgttcatgtgcattctgtagaggaggtggagggatgcgtgcacgaggtggcgctg
ccagagggaatggagtacgtgcccctgaaacggaacagagagggccccgccgcacgagag
tatagatttatcctggacccgtttcagcaggaagccatcctctgtctcgagcacaaccaa
agcgtcctcgtgtccgcccacacctcggctggcaaaactgttgtggctgagtatgcaata
tcactggcatttcaagagaagcagcgtgtgatctacacgacgcctatcaaagcactcagc
aaccagaagttccgggagttcacggatgatttcaaggacgtgggtttaatgactggtgat
gtcaccatcaacccaagtgccagctgccttataatgacaacagaaatcttgagaagtatg
ctgtacagggggtcggagatcatgcgagaggtcggctgggtcatctttgatgagattcat
tacatgagagacaaagaaagaggtgttgtctgggaggagaccatcatcttgcttccagac
aatgtgcggtatgtttttctgtctgccaccatccctaatgcgaagcagtttgccgaatgg
atatgtcatttgcataaacagccatgccatgtagtgtacacagaatatcgtccagtgcct
ctgcaacactacattttcccagctggcggcagcggactctaccttgtcgtagacgaaaat
gggaacttcaaggaggaaaaattcaacgaagcaatggctttgcttcagaatgcgggcgac
gctgccaagggtgactctgcccttaaagggcgcaagggtggattcaaaggagagtccaac
tgctacaagattgtgaagatgatcatggaacgtgactatgcgcctgttattgtctttagt
ttcagcaagaaggaatgcgaggcgtatgccacacagattgccaaactggacttgaccact
ttgaaagagaagaaactcgtgatggaggtcttccagaatgccatggactcactttcggag
gaagaccagaagttgcctcaggttgagcaggttctcccactgctgaagcgaggcattgcg
gtgcatcactccggcctgctgcccatcttgaaggagaccattgagattctctttgcagag
gggcttgtcaaggcactgtttgcaacagagacatttgctatgggactcaacatgcctgcc
cgtacagtactgttcacaaatgcaagaaagtttgacggcaaagacttcagatgggtcacc
tctggagaatacatccagatgagtggtcgtgccgggcgacgtggtctggacgaccgtggc
attgtcattctcatgatagacgaaaaaatgagtccagcggctggcaaggacattgtcaag
ggcttgcctgaccccatcaacagcgcattccacctgacctacaacatggtgcttaacttg
atgagagtggaagaagtgaacccggagtacatcctggagcggtccttctttcagtttcag
aacaatgcagccatcccagtttactatcaaaagctgcagaagttgcaagcagagctggag
tcattcaagattccgaatgagacggaggtggccgcgtactacaaggtgcggcagcagctg
gcctccctctcgcgtgagctgcaagccttcctcaccaagccccagtactgtgtcccgtac
ctgcaaccggggcgcatggtccatgtaaacaatggcactgatgactttggctggggtgtg
gtcgtcgcctactcgaagaagaaagttgtcgtcgcgagaggaaaacctggcctcaatgac
cccgtggtgattgtggatgttcttctcaacgtttccaaggaaagtgcccagacgaaactc
acgtcaaagttgacgcctcccaagccaggagagaaaggggaagtgcaggtggttcccctg
acaatcgacaacatcaccaagatgagtaccattcgcctgttcttcaaccaggatctgaag
tctaccgacaacagagccgcagtgctcaagtctatcaaggaagttgaagagagatttcca
aaaggcatcccccttgttgaccccttcgaggacctcaacattaaggatatcaacatgaga
gaagttgtcaagaaaatcgaggccttcgagaaccggatgtacgcgcatccactgcattca
catcctgaccttccaaagatttatgcggagtacgagaagaaaatgaaggttgcgcaggag
atcagggaggttaagaacgagctcaagaaggccaaggcactgctccaaatggaagaactc
aagtgtcgcaagagagttctccgacggcttggctactcgacggctgccgatgtcatggag
atcaagggcaaggttgcgtgtgaagtcagcagtgctgatgaactgcttgtcacggagatg
atcttcaacaacatgttcaacgagctcaatgcgcaccaagcaacagccttgctgagctgc
ctggtcttccaggagaagtcaaacgagatgcccaacctcaccgaagagctgtctggccct
ctgcgacagatgcaggacatagcacggaggatagcacgggtgaccaaggatgctaagctg
tgcatagacgaggacacctacgtcaactcgttcaagccgcatttgatggacgtcatctac
tcctggagcaagggagccacctttgcacaagtctgccgcatgacggacgtctttgaaggg
agcataattagatgtatgcggaggctggaggaattgctacggcagatcatccaggctgca
aagtgcataggaaacacagaactggaaaacaagttttcagaagccgtcaagctcatcaag
agggacattgtgtttgcagccagcttgtacctatag
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integrated database retrieval system
