Dermacentor silvarum: 119446602
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Entry
119446602 CDS
T07348
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dsv
Dermacentor silvarum
Pathway
dsv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119446602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsv03400
]
119446602
Enzymes [BR:
dsv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119446602
DNA repair and recombination proteins [BR:
dsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119446602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT
DNA_ligase_IV
mRNA_cap_enzyme
BRCT_2
Motif
Other DBs
NCBI-GeneID:
119446602
NCBI-ProteinID:
XP_037567005
EnsemblRapid:
LOC119446602
LinkDB
All DBs
Position
3:210697388..210723999
Genome browser
AA seq
893 aa
AA seq
DB search
MDTSTSLTTVAQKVPFGDLCKLCDKISGKQDRSDKRNLLEKFIAYWREFHDKLHAASGVQ
AAADDSFFPAMRLLLPHLDRDRPAYGIKEATLAKLYIDVLALGKDSPDAQKLLRYRTPHV
AKAEAGDFASVAYLVLRNRCPTKGTLTIADVNQLLDEVSDAHAHGGAAGSRRTRDALCTL
LRRTSAAEQKWLVRMILKEMKMGMSEGSILSCYHPDAQDVFDNSSSLSKICRELKDPKIR
QHVVQVTLFNAVRPMLAERAEPRSVERLLNHEPFFAETKFDGERLQVHKDDSEFRYFTRR
SHDYSSGFGATADEGSLTQYIAKSFRSHVKSCILDGEVIGYDPRNDRLVSKGSHVDVKSL
TESSSLQPCFVAFDILLLNGQVVTNKPLQERVGLLDQAVLEVPGRILISKRQKGSTRDDA
VRLLNQAIEDQEEGIVLKRLTSVYKPNARRAGWLKLKPEYVDNLVSDLDMLILGGYFGEG
RRSGIVSHFLLGVASGDRDDDGMPRSFWSVAKVGSGYSMKELDDLLAKLTTKWKVYDPKK
PPGKLVLAQGLKEKPDLYLEPSDSVVLQIKASELVRSSQFRTGITLRFPRVAAIRHDKPW
QDVLSYSELCELEKAAGGKLATATVGYDEDDGGSPAKKRRIGASVKASLGTHFRPANLSG
AVKKRSILQGKELCILTGCGDVTKQELEVQVDELGGTFVQNPSKETFCVVAEKLNFRARS
IIKSRKWDVVKADKFLALLNSPELRPWEPADLWCSCTETENRLKSLFDEYGDSYTAPVTA
SSLQELFATIPKEAWNHVDDLPGFIFNFEQENFDSRPTWGLFRNCTLRLSEDSKLNRLII
RLHGGKVLNTLGDGEVGNSGFDLNDMNTSEELLEVDSEWIDECIRAGELPLFS
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggatacatcaacatctctaaccacggtcgcccagaaagttcctttcggtgacctgtgc
aagctctgcgacaagatatccggcaagcaggacaggagcgacaagcggaacctgctggag
aagttcatcgcgtattggcgcgagtttcacgacaaactgcacgccgcgagcggagttcaa
gctgcggccgatgattccttctttcccgctatgcggcttctgttgccgcatctggacaga
gatcgaccggcgtatggaatcaaagaagccactctggccaaactctatatcgacgttctc
gccctcggcaaggacagtcccgacgctcaaaagttgctgcgctacagaacgccacacgtg
gcgaaagcagaggctggtgacttcgccagcgtcgcatatttggtgctgcgaaatcgctgc
ccgactaaagggacgctcaccatagccgacgtcaatcagcttttggatgaagtgtctgat
gcacacgctcacggtggcgccgcaggcagtcgacggacgagagatgcgctatgcacgctg
ctgcgccgtacttctgccgcagagcaaaagtggctggtaagaatgattctaaaggagatg
aaaatgggcatgagcgaagggagtatactttcctgctatcatccggacgcgcaggacgtt
tttgacaacagcagcagcctctcgaagatttgtcgagaactgaaagacccgaaaattcgg
cagcacgttgttcaggtcacactgttcaatgccgtgcgaccaatgctggccgagagagcg
gagcctcgttctgtcgagcgtctcttgaatcacgagcccttctttgccgagaccaagttt
gatggcgagcggctgcaggtgcacaaggatgactcagagttcaggtacttcacacggcgc
agccatgactatagttcgggcttcggagccactgctgatgaaggatctttgacacagtac
atagctaagtcatttcgaagccatgtaaaaagttgcatcttagatggagaggtaatagga
tatgaccccaggaatgatcgtcttgtttcaaaaggttctcatgtagacgtgaaaagttta
acagagagttcatcattacagccctgctttgtggcctttgatatactcctcctgaatgga
caggtagtcaccaacaagcctcttcaggagagagtcgggcttcttgatcaggctgtattg
gaagttcctggcagaatactgatctctaaaaggcagaagggttcgacacgagatgatgct
gttcgtcttctaaaccaagcaattgaagaccaagaagaaggcattgttctaaaaaggctt
acttctgtttacaaacctaatgcaaggagagctggctggctgaaactcaagccagagtat
gtggacaacttagtttcagatctagacatgcttattctcggtggatatttcggagaaggg
cgtcgcagtggtattgtctctcactttctcttgggtgtcgccagtggagatcgcgacgac
gatggtatgccacggtctttctggtcggtagcaaaggtgggctctgggtacagcatgaaa
gaactggatgacctgcttgccaaattgacaacaaaatggaaagtttatgacccaaaaaaa
cctccaggaaagcttgtacttgcacaaggccttaaagaaaaaccagacttatacctcgag
ccatcagactctgtagtacttcagataaaagcttcggagctcgttcgcagtagtcagttc
aggacaggtataacattgagatttcctcgtgtggctgccattcgccatgataagccttgg
caagatgtgctgtcgtattcagagctttgtgaactagagaaggcagcgggtgggaaactg
gctactgccacagttggctatgatgaggatgatggtggttcaccagcaaaaaagaggcgc
atcggagccagtgtaaaggcatctttaggcacacactttcggccagctaatttatctggt
gcagtaaagaagcgaagtattcttcagggaaaggagctgtgcattctgacaggctgtgga
gatgtcacaaagcaggagctggaagtccaggtcgatgaattgggaggcaccttcgtccaa
aatcccagcaaggaaacattttgtgttgttgcagagaagctaaacttcagagcacgcagt
atcatcaaatcgagaaaatgggatgtcgttaaagcagacaagtttcttgcacttctcaat
tcccctgagcttcggccatgggagccagcagacctgtggtgctcctgcactgagacagaa
aaccggctgaagagcttgtttgatgaatatggtgatagctacacggcccctgtgactgca
agttctttgcaggaactctttgcaaccattcccaaagaggcgtggaaccatgttgatgac
ttaccagggttcatttttaattttgagcaggagaactttgactctcggccaacgtggggc
ctattcagaaactgcacattgagattgagcgaggatagtaaattaaatagattaattatt
agattgcatggcggtaaagttctgaacactctaggagatggggaagttggtaattccggc
tttgatttgaatgacatgaatacttcggaggaattgttggaagtggatagtgaatggatt
gatgaatgcattcgagctggtgaactgcctcttttctcttga
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