Deefgea tanakiae: K4H28_02385
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Entry
K4H28_02385 CDS
T08586
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dtk
Deefgea tanakiae
Brite
KEGG Orthology (KO) [BR:
dtk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dtk03009
]
K4H28_02385 (rlmD)
Enzymes [BR:
dtk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K4H28_02385 (rlmD)
Ribosome biogenesis [BR:
dtk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K4H28_02385 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Met_10
Methyltransf_25
Methyltransf_12
Methyltransf_11
Methyltransf_15
RrnaAD
MTS
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
QZA78285
LinkDB
All DBs
Position
complement(501352..502677)
Genome browser
AA seq
441 aa
AA seq
DB search
MTKPASRPNPIATVESLDHEGHGVARYEGKTIFIDGALPFETISFSSYRKKPTFENAQAI
IIHNESFMRVKPKCPHFGVCGGCSMQHMEFGAQVAAKQRILEDNLQRIGKVTAEAMLPAI
YGTPWGYRSRGRLSARYVAKKEKVLVGFHERRSGFIADMSECHVLPKSMSDQLLPLRDLI
SSLSIVNDMPQIELAVGENVTVLVFRIMTEISENDAALFKAYADQWKVQIWLQPKGPDSA
YPFYPLDAPALTYSLPEFGIEMPFKPTEFTQVNYGINRVMVERAMKLLDPQKDELIADMF
CGLGNFTLPIARSGAKVLGMEGSQQLVERALEGAKHNHLDHLTSYEIANLFEMTEEWLNK
LGKFDKMLIDPPRDGAMALCNSISIEHGPKRIVYVSCSPATLARDADILVNIKGYTLKNA
GVINMFPHTAHVESIAWFEKE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaccagcatcccgccctaatccaattgccaccgtagaatcactcgaccacgag
ggtcatggtgtagcccgctatgaaggaaaaaccatcttcatcgatggcgcactgcctttt
gagaccatttcatttagcagctaccgcaaaaaaccgacctttgagaatgcgcaagctatc
ataatccataatgaaagctttatgcgcgtgaaacctaaatgtccgcattttggcgtctgt
ggtgggtgctctatgcaacacatggagttcggtgcacaggttgccgccaagcaacgcatt
ttagaagacaatctgcagcgcattggcaaggttaccgccgaagcgatgttgcccgcgatt
tacggtacaccatggggctatcgctcacgtgggcgactctcggctcgctatgttgcgaaa
aaagaaaaagtgttggttggctttcatgagcgccgttctggctttattgccgacatgagc
gaatgtcatgtcttgcctaaatcgatgtcggaccaactgctaccgctgcgcgacttgatc
tcgtcactatcaatcgtcaacgacatgccacaaatcgaactcgcggtcggtgaaaacgtc
accgtactggtattccgcatcatgaccgagattagcgagaatgacgctgcgctgttcaaa
gcgtatgccgatcaatggaaagtacaaatttggctgcaacccaaaggcccagacagcgcc
tatccattctacccgcttgatgcgcctgccctcacctattctctgcctgagtttggtatt
gaaatgcctttcaaaccaaccgaattcacgcaagtcaattacggcatcaaccgcgtgatg
gtcgaacgtgcgatgaaactactcgacccacaaaaagacgagctcatcgccgacatgttc
tgtggtttaggtaatttcacactacctattgcccgcagcggtgccaaagtactcgggatg
gaaggtagccaacaattggtcgaacgtgctctcgagggagcaaagcacaatcacctcgat
cacctgactagctacgaaatcgccaatctatttgaaatgaccgaagaatggctcaataaa
cttggtaaattcgacaaaatgctgatcgatccgccacgtgacggagcgatggcgttatgc
aattcgattagtattgagcacggtccaaaacgaattgtgtatgtatcctgtagcccagcc
acactcgcccgcgatgcagacattttagtaaatattaaagggtatacactcaagaatgcc
ggcgtaattaacatgttcccacatactgctcacgttgaaagcattgcttggtttgaaaag
gaatag
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