Deefgea tanakiae: K4H28_06995
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Entry
K4H28_06995 CDS
T08586
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dtk
Deefgea tanakiae
Pathway
dtk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dtk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K4H28_06995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtk03400
]
K4H28_06995 (mfd)
Enzymes [BR:
dtk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K4H28_06995 (mfd)
DNA repair and recombination proteins [BR:
dtk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K4H28_06995 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
ERCC3_RAD25_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QZA79136
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All DBs
Position
1486811..1490221
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AA seq
1136 aa
AA seq
DB search
MRPHLMSLPELPRANERLQIAQPHGSADAMLLASYAQAARPLVIFTANAQEAARLKDELG
FFLHEKTVLQLPDWETLPYDHFSPHSDLISERLATLWQVRQNAVDVLIVPLQTAMGILPP
VEFLTATTFFIKKGDPFDAEKLRADMAFAGYSHVTQVYGPGEFSIRGGLIDLFPMGSTLP
FRIDLFDNEIESIRTFDVDTQRSLYPVPEIRLLPAREFPTDEEGRKKFRQNFREAFEGDP
SKARLYKDISNGVIPAGIEYYLPLFFERTATVFDYLPQEAVLVLHGELLSAAGQYWQDIA
ERHKLSYGEKDRPLLPPRQLFVEPDLLFANIKKYRRIDLIQGETSLTHPLPALDVDRRNE
NPIRRLNDFITQYSGKIILSAESLGRRETMAQFFAEYGLKPALLDTWADALASNEHAILL
ASPLFKGFEWRSATIAVITEADLYPSVIQSRGKKQQKRSNTDAMLRDLSELKIGDPVVHE
AHGIGRYMGLTSMDLGDGATELLLIEYSGNDKLYVPVSQLHVISRYSGGASDTAPMHKLG
SGSWEKTKRKAAEQVRDTAAELLNLYARRAAREGHAFEWNPHDYEAFAAGFGFEETADQA
GAIEAVLVDMRIKQPMDRLVCGDVGFGKTEVALRAAFAAVAGGKQVAVLVPTTLLAEQHY
QTFADRFADWPIKIAELSRFRSGKETSAAIAGLADGSVDIVIGTHKLVQPDVVFKQLGLV
IIDEEHRFGVRQKEQLKALRANVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPNKRLAV
KTFVAKFSDGIIREAVLRELKRGGQVFFLHNEVDTIENMREKLAALLPEARIGVAHGQMR
GRELEHVMRDFTQQRFNLLLCSTIIENGIDIPNANTILMNRADKFGLAQLHQMRGRVGRS
HHQAYAYLLVPDLEGITKDAKKRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDSQSGE
MQEIGFSLYSQMLKEAVKALKSGKEPDLSQPLGVTTEINLHSPALLPEEYCPDINERLSL
YKRLASVDEKDELNDIHQELVDRFGLLPEPAKVLLDCHRLRMLAKPLGISKIDAADTAII
VHFAQNTVVEPMKIISLIQSKKHYKLQGQDKLRIEGDWPSSALRAARINELLRELI
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgcgccctcatcttatgtcgctacccgaacttcctcgcgctaacgaacgtctgcaaatt
gcacaaccgcacggttctgccgatgcgatgctgttagccagttatgcgcaagctgcacgc
cccttggtgatttttacagccaatgctcaggaagctgcgcgacttaaagatgaactcggg
tttttcttacacgaaaagaccgttctacagttgcccgactgggaaaccctcccttacgat
catttttcaccgcactctgacttaatcagcgaacgcctcgcaacactgtggcaagttcgc
cagaatgctgtcgatgtattgatagtgccacttcaaactgcgatggggatattgccgccg
gtagaatttttaaccgcaaccaccttttttatcaaaaaaggcgacccattcgacgcagaa
aaactccgtgctgatatggcctttgccggttacagccacgttacgcaagtgtatggacct
ggcgagttttcaatccgcggcggattgatcgacctatttccgatgggcagtacactgccg
tttcggattgatttattcgacaatgaaattgaatcgattcgcacttttgacgtagataca
caacgcagcctgtacccagtaccagagattcgcctactgccagcgcgtgaatttccgacc
gatgaagaaggtagaaaaaaattccgacaaaatttccgcgaagcatttgaaggtgaccct
tcgaaagctcggctctacaaagacatttccaatggcgtcattcccgctgggattgaatat
tacctgcccttgttttttgaacgcacagcaactgtttttgattacctaccgcaagaagca
gtattggtcttacacggagagctactcagcgctgcagggcaatactggcaagacatcgcc
gaacgacacaaactcagctacggcgagaaagaccgaccactactaccaccacgccagctt
ttcgtcgaacctgatctgctctttgccaatatcaaaaaatatcgccgcattgatctgatt
caaggcgaaaccagcctaactcacccattgccggcgctggatgtagatcgacgcaacgaa
aaccctatccgtcgcctcaatgatttcatcacccaatacagtggaaaaatcattctcagc
gcagaaagcttgggccgccgtgaaacgatggcgcagttttttgccgagtacggtttaaag
ccagccttactcgatacatgggctgatgcactcgccagcaatgaacacgctattttgttg
gcttcgcccttattcaaaggttttgaatggcgtagcgctaccattgcagttatcaccgaa
gccgatttatacccatcggtcattcaaagtcgcggtaaaaaacaacaaaaacgcagcaat
accgatgccatgctgcgcgatctatccgagctcaaaatcggcgatcccgtcgtccacgaa
gcacacggtattggccgctacatgggcctcacctcgatggatttgggcgatggcgcgact
gagttattgctgattgaatattctggcaacgacaaactctacgtacccgtaagccaattg
cacgtcatttcgcgctactcaggcggagcatccgacactgcaccgatgcacaagctgggt
tctggttcgtgggaaaaaaccaagcgtaaagccgccgaacaagttcgtgatacggccgcc
gagttactcaatttgtacgcccgccgcgcagcgcgcgagggtcatgccttcgagtggaat
ccacacgactacgaagccttcgccgctggctttggctttgaagaaaccgccgaccaagct
ggtgcgattgaagccgtcttggtcgatatgcgcatcaaacaaccgatggatcgtttggtt
tgcggcgatgtgggctttggtaaaaccgaagtcgcactgcgcgccgcgtttgcagccgtt
gccggaggcaagcaagtcgcggtgctggtgccaaccacactattagccgaacaacattac
caaacctttgccgaccgttttgccgattggccgattaaaattgcggaattatcgcgcttt
agatccggcaaagaaaccagtgcagcaattgcaggtctcgcagatggtagcgtcgatatc
gtgattggcacgcacaaattagtgcagccggatgttgtattcaaacagctcggtttggtc
atcatcgatgaagagcatcgttttggtgtgcgccaaaaagagcaactcaaagcacttcgc
gcgaatgtcgacgtactgacgctcacagcaacgccgattccacgtactttggcgatgagt
ctggaaggtctacgcgacttttcggtaatagccactgcaccgaacaaacgccttgccgta
aaaacctttgttgccaagttctctgacggcattattcgcgaagccgtactgcgtgaactc
aagcgcggcgggcaagttttcttcttgcataatgaagtcgacacgatcgaaaacatgcgc
gaaaaactcgctgcactcttgcccgaagcgcgcatcggcgtcgcgcacggccaaatgcgt
ggccgcgaactcgaacacgtgatgcgtgattttacgcagcagcgctttaatttactgctc
tgctcgacaattatcgaaaacggtatcgacatcccgaacgccaataccatcttgatgaat
cgcgctgataaattcggcctcgcccagttacaccaaatgcgcggccgcgttggtcgatcg
caccatcaggcctacgcttacctgctcgttcccgacctagaaggcattactaaagacgca
aaaaaacgcctcgaagcgattcaacaaatggaagaactcggctccggcttctacctagca
atgcatgacttggaaatccgtggtgcgggtgaagtgctgggcgattcgcagtcgggtgaa
atgcaggaaatcggtttctcgttgtactcacaaatgctcaaagaagcggtcaaagcactt
aaatcaggcaaagaacccgatctgtcacaaccactgggcgttaccacagaaatcaacctg
cattcgccagcgctgttgccagaggaatattgcccagatattaacgagcgcttgtcactc
tacaaacgccttgccagcgtcgacgaaaaagacgaactcaacgacattcaccaagaactc
gtcgatcgttttggtttactgccagagcctgccaaggtactgctcgactgccaccgctta
cggatgctcgccaagcctttagggattagcaaaattgatgccgccgatacggccatcatc
gtgcatttcgcgcaaaacaccgtcgttgagccgatgaaaatcatcagcctgattcagagc
aaaaaacactacaaactacaaggccaagacaaactacgcatcgaaggcgactggccttcc
agcgcactgcgcgcggcgcggattaacgaattactcagagagctaatttaa
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