Delftia tsuruhatensis: BI380_07525
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Entry
BI380_07525 CDS
T04496
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dts
Delftia tsuruhatensis
Pathway
dts03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BI380_07525 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dts03400
]
BI380_07525 (ligD)
Enzymes [BR:
dts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BI380_07525 (ligD)
DNA repair and recombination proteins [BR:
dts03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BI380_07525 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AOV01224
UniProt:
A0A1D8IXR7
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All DBs
Position
1643335..1646013
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AA seq
892 aa
AA seq
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MPAPRRSHPVTQQPRRAAAAGGQDKAAASLAAYRQKRDFTRTPEPSAEPSSDTIAGQPGT
GVLQFVIQKHWASHLHYDFRLELDGSMKSWAVPKGPSYDPADKRMAVQVEDHPMAYNRFE
GQIPPGQYGAGKVIIWDRGTWWPQGDAAEGLRKGKLKFELRGHKLQGRWTLVRMRGKDDA
KKPAWLLIKEHDGLERAAGEFSVVEDMPDSVAGLPLEPAAAATTETTTATATATAAARKQ
HAGTATMPQEIVPQLATLVDRPPTEAGQWIFESKFDGYRLLARIDSGTVRLVTRNGKDWT
ARMPALARALAALPLQTGWIDGEVLMLDSDERPDFQALQNAFDGEHTDLLVFFAFDLLWH
DGQDLRQQPVEQRRQRLQELLHKAPSDRVRFSQAFDAPPADLMAAACRLGLEGVIGKRRG
SAYVSRRSMDWIKLKCGHRQEFVIAGYTDPQGSRTGLGALVLAVHGEDGQLHAAGKVGTG
FNARTLADLRQRLDGLATGTSPLADTRGLGSQVHWVRPTLLAEVSFAQWTADGRIRHAVF
QGLRTDKPARRIAKEEPQHVPSTASSPRTATRHKAAPPRMAKAARLPTTIAITHAERVID
PSTGITKMELARYYATVAPFMITHLKARPVAMVRAPEGIEGELFFQKHMDQTPLQGIAAL
APELDPGHAPLMEVARREGLVAAAQMNTIEWHTWNARRDRIDRPDRMTFDLDPGEGVPWT
QVQEAATLLHVLLQELELPAFLKTSGGKGLHVVVPIKRLLDWDTVKAFSQAVVQHLASTV
PQRFVAKSGPRNRVGKIFVDYLRNGFGATTACAWTARARPGMGISVPVGWNELDRLTGGA
HWTIRSVDQRLRLGNSPWEHYGTAATSLGRAMKALGFEAPAREEPPTRKAQR
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaccgcgccgcagccacccggtcacgcagcagccgcggcgggctgctgcggcc
ggcgggcaggacaaggctgccgcttcgctggcggcctaccggcaaaagcgcgacttcacg
cgcacgccagagccctcggcagaaccttccagcgacacgattgcagggcagcccggcacg
ggtgtcctgcaattcgtcattcaaaagcactgggccagccatctgcactacgacttccgg
ctggagctggacggcagcatgaaaagctgggccgtgcccaagggccccagctacgacccg
gccgacaagcgcatggccgtgcaggtggaagaccaccccatggcctacaaccgcttcgaa
ggccagattccgccgggccagtacggcgcgggcaaggtcatcatctgggaccggggcacc
tggtggccacaaggcgacgccgccgagggccttcgcaagggcaagctcaagttcgagctg
cgcggccacaagctgcagggccgctggaccctggtgcgcatgcgcggcaaggacgatgcc
aaaaaacccgcgtggctgctgatcaaggagcatgacgggctggaacgcgccgccggcgaa
ttcagcgtggtcgaggacatgcccgacagcgtggccggccttcccctggaacctgcagca
gcggcaacgacagaaacaacaacagcaacagcaacagcaacagcggcagcacgaaagcag
cacgccggcaccgcgaccatgccgcaggagatcgtcccccagctggcgaccttggtggac
cgcccgcccacggaggccgggcaatggatcttcgagagcaagttcgacggctaccgcctg
ctggcccgcatcgacagcggtaccgtgcggcttgtcacgcgcaacggcaaggactggacc
gccagaatgcctgccctggcccgcgccttggcggccttgcccttgcaaacaggctggatc
gacggcgaggtgctgatgctggacagcgacgaacgccccgacttccaggccctgcagaac
gccttcgacggcgagcacaccgacctgctggtcttcttcgccttcgacctgctgtggcac
gacggccaggacctgcgccagcagcccgtggaacagcgccgccagcggttgcaggagctg
ctgcacaaggcgccgtcggaccgcgttcggttcagccaggcctttgacgccccgcccgcc
gacctgatggctgccgcctgccggctgggcctggagggcgtgatcggcaagcggcgcggc
agcgcctacgtctcgcggcgcagcatggactggatcaagctcaagtgcggccaccgtcag
gagttcgtgatcgccggctataccgatccccagggctcgcgcaccggcctgggggccctg
gtcctcgccgtgcatggcgaggacgggcagctgcacgcggccggcaaggtcggcacgggt
ttcaacgcacgcaccctggccgacctgcgccagcgcctggacggcctggccaccggcaca
tccccgctggcagacacccggggccttggcagccaggtgcactgggtgcgccccaccctg
ctggccgaagtctcgttcgcgcaatggaccgcggacggccgcatccgccacgccgtattc
cagggcctgcgcacggacaagcctgcgcgccgcatcgcaaaagaggagccacagcacgtg
ccatcgaccgcatcttcaccccgcaccgcaacccgccacaaagccgccccgccccgcatg
gccaaggcggcgcgcctgcccaccacgatcgccatcacccatgccgagcgtgtcatcgac
ccctccaccggcatcaccaagatggagctggcgcgctactacgccacggtggcccccttc
atgatcacccacctcaaggcccggcccgtggccatggtgcgcgcgccggagggcatcgag
ggcgagctgttcttccagaaacacatggaccagacgccgctgcagggcattgccgccctg
gcgcccgaactcgatcccggccatgcgccgctgatggaggtggcgcggcgtgaaggcctg
gtggcggccgcgcagatgaacaccatcgaatggcacacctggaatgcccgccgggaccgc
atcgaccggcccgaccgcatgaccttcgacctggaccccggcgagggcgtgccctggacg
caggtgcaggaagcggccaccttgctgcatgtgctgctgcaggagctggagctgccggcc
ttcctcaagaccagcggcggcaagggcctgcatgtggtcgtgccgatcaagcggctgctg
gactgggacacggtcaaggccttctcccaggccgtggtccagcacctggccagcaccgtg
ccccagcgcttcgtggccaagagcgggccacgcaaccgcgtgggaaaaatcttcgtggac
tacctgcgcaacggctttggcgccaccacggcctgcgcgtggacagcgcgtgcgcggccc
ggtatgggcatctccgtgcccgtgggctggaacgagctcgacaggctcacgggcggcgcg
cactggaccattcgctcggtggaccagcgcctgcgcctgggcaactcgccctgggagcac
tacggcacggcggccaccagcctgggccgcgccatgaaggcgctgggcttcgaggcaccg
gcccgcgaagagccgccaacgaggaaagcacaacgatga
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