Dehalococcoides sp. UCH007: UCH007_07160
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Entry
UCH007_07160 CDS
T03880
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
duc
Dehalococcoides sp. UCH007
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UCH007_07160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
duc03400
]
UCH007_07160
Enzymes [BR:
duc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UCH007_07160
DNA repair and recombination proteins [BR:
duc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UCH007_07160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
Motif
Other DBs
NCBI-ProteinID:
BAQ34674
UniProt:
A0A0C6E206
LinkDB
All DBs
Position
691414..691968
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AA seq
184 aa
AA seq
DB search
MPSNPLEEYNRKRNFAKTAEPSGVRSTLSVQPVFVVQKHLASRLHYDFRLEIDGVLKSWA
VPKGPSASPKEKRLAVPTEDHPMQYASFEGVIPAGEYGAGQVIVWDRGTFTNLKAGKTLA
ESYDTGHLVIELQGEKLKGGYSLLRTKMGWLMVKMEDAFARPLSNILDEQPASVISGKLV
ENIT
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccaaccctctggaagaatataaccgcaaacgtaattttgctaaaactgctgaa
ccttctggtgtacgaagtacactctctgtacagccagtatttgttgtccaaaaacacctt
gccagccgcctgcactatgatttcagactggaaattgatggggttttaaaatcatgggct
gttcccaaagggccgtctgccagtcctaaagaaaaacggctggctgtgcctaccgaagac
catcccatgcagtacgcctcttttgaaggtgtaataccggcgggtgaatacggggcgggg
caggtgatagtctgggatagaggtacttttacaaaccttaaagcaggaaaaacactggca
gagtcttatgacacaggacatctggtaatagaacttcagggtgaaaaactcaaaggcgga
tattcgcttttacggactaaaatgggctggttgatggtgaagatggaagatgcatttgcc
cgcccgttatcaaatatacttgatgaacaaccggcttcggtgataagcggaaaattggtt
gaaaatattacttaa
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