Duganella dendranthematis: HH213_24300
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Entry
HH213_24300 CDS
T06560
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dug
Duganella dendranthematis
Pathway
dug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HH213_24300 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dug03400
]
HH213_24300 (mfd)
Enzymes [BR:
dug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH213_24300 (mfd)
DNA repair and recombination proteins [BR:
dug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HH213_24300 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QJD92934
LinkDB
All DBs
Position
complement(5283868..5287311)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSSALTKSIPKPGNRFALPALHGSADAYALAQIALELKSRGQMLAIVVANASDAQRLLDE
IPWFGGAQLRCHLLPDWETLPYDAFSPHQDLVSERLATLHEISSGQCDVMLVPATTALVR
MAPPSFLAAYTFFFQQGESLDEARLKAQLTLAGYTNVTQVMSPGEYSVRGGLIDLFPMGS
ALPYRLDLFGDTIETIRTFDADTQRSLYPVKQVRLLPGREFPMDEASRTAFRSRWREHFE
GDPSRSVVYKDISAGIASAGIEYYLPLFFDDTATLFDYLPQGAVVATVGDIEAAIKRFWT
DTGSRYRFLRADRERPIMAPEQLFLSDEQFFVLAKPYPQIAIRQNADAGASELSAPVPNI
AVNRHLDDPLTNLRAYLMQSGARVMICAESNGRRETLQQYFTEYGLELAPVEGFDGFIAS
DAKLALGVAPLHAGFELSVDGKPLIFITETELYAGSGRRAGKKKQEAVTQVESMVRDLSE
LKIGDPVVHINHGIGRYMGLTSMDLGEGDAEFLHLEYAKETKLYVPVSQLHVISRYSGAS
PDDAPLHTLGSGQWEKAKRRAAEQVRDTAAELLNLYARRALRQGHSFEYSAHDYERFADS
FGFDETPDQQEAINNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILA
PTTLLAEQHAQTFADRFADWPVRIAEMSRFRTGKEIAQAIKGMADGTLDIIIGTHKLLSD
DVKFTRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRSEGESIIREACLRELKRGGQVYFLHNEVETIQNRMAMLTELLPEA
RIAVAHGQMHERDLEKVMRDFVAQRYNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDVQSLTKQAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG
EVLGDNQSGEMTEIGFQLYSDMLNEAVRSLKAGKEPDLAAPLSTTTEINLHVPALLPADF
CGDVHERLSIYKRMANCETQGKIDDMQEELIDRFGKLPDPVKALIETHRLRIAAKTVGII
KIDAHTEAASLQFMAKPPIDPMRIIELIQKNRQIKLNGQDKLKITAAMPDLAARVTQIKA
AIKQLTA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcagccttaactaaatccatcccaaaacccggcaaccgctttgccctgcccgcg
ctgcatggctcggcggacgcgtacgccctggcgcaaatcgcgctcgaactcaaatcccgc
ggccagatgctggccatcgtggtggccaacgccagcgatgcccagcgcctgctggacgaa
atcccctggttcggcggcgcgcagctgcgctgccacctgctgccggactgggaaacgctg
ccctacgatgccttctcgccgcaccaggacctggtgtccgagcgcctggccacgctgcac
gaaatctccagcggccagtgcgacgtcatgctggtgccggccaccactgcgctggtacgc
atggcgccgccgtccttcctggccgcctacaccttcttcttccagcaaggcgaatcgctg
gacgaagcgcgcctgaaagcccaactgacactggccggctacactaatgtcacgcaggtg
atgtcgcccggcgaatactcggtgcgcggcggcctgatcgacctgttcccgatgggctcc
gcgctgccgtaccggctcgacctgttcggcgacaccatcgaaaccatccgcaccttcgac
gccgacacccagcgttcgctgtacccggtcaagcaggtgcgcctgctgccgggccgcgaa
ttcccgatggacgaagcgtcgcgcaccgccttccgcagccgctggcgcgagcacttcgaa
ggcgatccgtcgcgctccgtggtgtacaaggacatcagcgccggcatcgcctcggccggc
atcgaatactatctaccgctgttcttcgacgacaccgccacgctattcgactacctgccg
caaggcgcggtggtggccaccgtgggcgacatcgaagcggccatcaagcgcttctggacc
gacaccggctcgcgctaccgcttcctgcgcgccgaccgcgaacgcccgatcatggcgccg
gaacagctgttcctgtcggacgaacagttcttcgtgctggccaagccgtatccgcagatc
gccatccgccagaacgcggacgccggcgcttccgagctgtcggcgccggtgcccaacatc
gccgtcaaccgccacctggatgacccgctgaccaatctgcgcgcctacctgatgcagtcc
ggcgcgcgcgtgatgatctgcgccgaatccaacggccgccgcgaaacgctgcagcagtac
ttcaccgaatacggtctggaactggcgccggtggaaggcttcgacggctttatcgcctcg
gacgccaaactagcgctgggcgtggcgccgctgcacgccggcttcgaactgtcggtcgac
ggcaagccgctgatcttcatcaccgagaccgagttgtacgccggctccggccgccgcgcc
ggcaagaagaagcaagaagccgtcacccaggtcgaatcgatggtgcgcgacctgtcggaa
ctgaagatcggcgatccggtggtgcacatcaatcacggcatcggccgctacatgggcctg
accagcatggacctgggcgaaggcgatgccgaattcctgcacctggaatacgccaaagag
accaagctgtatgtgccggtctcgcagctacacgtcatttcgcgctactccggcgcctcg
ccggacgacgcgccgctgcacacgctgggctccggccagtgggaaaaagccaagcgccgc
gccgccgaacaggtgcgcgacaccgccgccgaactgctcaacctctacgcccgccgcgcg
ctgcgccagggccattcgttcgagtattcagcgcacgactacgagcgcttcgccgacagc
ttcggtttcgacgaaacaccggaccagcaggaagccatcaacaacgtcatcaaggatatg
acctcgggcaaaccgatggaccggctggtgtgcggcgacgttggcttcggcaagaccgag
gtggcgttgcgcgcagcgttcatcgccgtcatgggcggcaagcaggtcgccatcctggcg
ccgaccacgctgctggccgaacagcatgcgcaaaccttcgccgaccgcttcgccgactgg
ccggtgcgcatcgccgaaatgtcgcgcttccgcaccggcaaggagatcgcgcaggcgatc
aagggcatggccgacggcacgctggacatcatcatcggcacgcataaactgctgtcggac
gacgtcaagttcacccgccttggcctggtgatcatcgacgaggagcaccgcttcggcgtg
cgccagaaggaagcactgaaatcgctgcgcgccgaagtcgacgtgctgacgctgaccgcc
acgccgatcccgcgcacgctgggcatggcgctggaaggcctgcgcgacttctcggtcatc
gctaccgcgccgcaaaagcggctggcgatcaagaccttcgtgcgcagcgagggcgagtcg
attatccgcgaggcctgcctgcgtgaactcaagcgcggcggccaggtctacttcctgcac
aacgaggtggagaccatccagaaccgcatggcgatgctgaccgagctgctgccggaagcg
cgcatcgccgtcgcccacggccagatgcacgaacgcgacctggaaaaagtgatgcgcgat
ttcgtcgcacagcgctacaacatcctgctgtgcaccacgattatcgaaaccggcatcgac
gtgccgaccgcgaacaccatcatcatgcaccgcgccgacaaattcgggctggcgcaactg
caccagctgcgcggccgcgtcggccgttcgcaccaccaggcctatgcctacctgctggtg
cacgacgtgcagtcgctgaccaaacaggcgcagcgccgccttgacgccatccagcagatg
gaagaactgggcagcggcttctatctggccatgcacgatctggaaatccgcggcgccggc
gaagtcctcggcgacaaccagtccggcgagatgaccgagatcggcttccagctgtactcg
gacatgctgaacgaagcggtgcgttcgctcaaggccggcaaggagccggacctggcggcg
ccgctgtcaaccactaccgaaatcaacctgcacgtgccggcgttgctgccggccgatttc
tgcggcgatgtccacgaacggctatcgatctacaagcgcatggccaattgcgaaacgcaa
ggcaaaatcgacgacatgcaggaagagctgatcgaccgtttcggcaagctgccggacccg
gtcaaggcgctgatcgaaacccaccgcctgcgcatcgccgccaagacggtgggcatcatc
aagatcgacgcgcatacagaagcggccagcctgcagtttatggcgaagccgcccatcgac
ccgatgcgcatcattgagctgatccagaaaaatcgtcagatcaaattgaacggacaggat
aaactgaagattaccgccgccatgcctgacctggccgcgcgcgtcacacagatcaaggcc
gccatcaagcagctcaccgcataa
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