Dermabacter vaginalis: DAD186_09080
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Entry
DAD186_09080 CDS
T04434
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dva
Dermabacter vaginalis
Pathway
dva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DAD186_09080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dva03400
]
DAD186_09080
Enzymes [BR:
dva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DAD186_09080
DNA repair and recombination proteins [BR:
dva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DAD186_09080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
AA_kinase
RecG_dom3_C
UB2H
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
ANP27458
UniProt:
A0A1B0ZHP4
LinkDB
All DBs
Position
1025310..1028978
Genome browser
AA seq
1222 aa
AA seq
DB search
MSIAPVLAAAAQSADLARFAEADFSHESLSVIATSGMHPLYLADEASRRGPMAPLVVVTA
TTREAEDLAAQVEAFVPGAKVALFPAWETLPHERLSPRSDTVARRLSTLYTLAHPEETGG
VEVLMMPVRALVQPMARGLEKLAPVHLERGEFIEIDELVEKLVGAAYSRVDMVSARGEFA
VRGGIVDVFPPTLSHPVRLDFFGDELEEIRYFSVADQRSLEETLEVVDAPACREILLTDE
VRERARTAIEQLPGAADLLGRLAEGIAVEGMESLTPLLVGEMVSLVDVLPAKSSVVFVEP
ERIRTRVEELVRTTDEFLEAAWTSAAQGGAVPIDVAQASFSTLEDTLGELEARQIPVSSI
APFGLDADLTSHAKPHPGYGGSIANAARDLAQHVSEGWRIVLTTAGAGTGRHIAEALTQA
GVAARFSADLDEELSATHVSITTGPITEGVLLEDVKIMLMCERDMTGKSAARRSSSKKLA
SRRRASVDPLQLSPGDYVVHNHHGVGRFVEMTSRTVGTGDKRATREYIVIEYASSKKGQP
GDRLYVPSDQLDQVTKYVGGETPSVNKMGGSDWSKTKSRARKAIREIADELVRLYSERQR
SSGFAFSPDTPWQHELEDAFEYTETPDQLSTIDDIKRDMEKPLPMDRLVCGDVGYGKTEV
AVRAAFKAVQDGKQVAVLCPTTLLAQQHIETFTERYAGFPVNVRGLSRFQTPSESKAVIE
GLKDGSVDVVIGTHRLITGQVRFKDLGLIIVDEEQRFGVEHKETLKALRTNVDVLSMSAT
PIPRTLEMAVTGIRELSTLATAPEERHPVLTYVGAHEDAQVKAAIRRELLREGQVFYIHN
RVEDIDRTAEHLRELVPDARVEVAHGKLNEAQLERVILDFWEKRFDVLVCTTIVETGLDI
SSANTLIVENADRFGLSQLHQLRGRVGRSRDRAYAYFLYPPAKPLTETAHDRLTTLATHS
ELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVAAFKGELDQGAKET
KVELPLNAHIPVEYIDSERLRLEAYSKISAAKSADELEGVRAEVEDRYGKPPAEVERLFH
VARFRLDASEVGIDEVQVQGKMIRFAHVEVSDSVQLKLRRLYPGTVLKPALRQVLIPHPR
TQRIGGIPLADEELLEFCRGVLAHLKPEWAKERGIEVAEQPSEPSRPRTFGQRSPRASRL
ENSRRDAPQGTRQAGLGRKGHA
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
gtgagtatcgcccccgttctcgcggctgccgcgcagtccgccgatctcgcccgatttgcc
gaggccgatttctcgcacgagtcgcttagcgttatcgccacgagcggcatgcacccgctc
tatcttgcggatgaagcttcgcgcagggggccgatggccccactcgtggtggtcactgcc
acgacgcgtgaagccgaggacctcgccgcccaggttgaagcattcgtccccggtgccaag
gtggcgcttttcccagcatgggaaacactcccacacgagaggctttcgccgcgaagcgat
acggtcgcgcgcaggctttcgactctgtatacgctcgcgcatcccgaggaaacgggtggt
gtggaggtcctcatgatgcccgtgcgtgcgctcgtgcagcccatggcgcggggcctcgag
aagctcgcacccgtgcatcttgaacgcggcgagtttatcgagatcgacgagctcgtggaa
aagctcgtgggcgcagcgtactcgcgcgtggatatggtgtccgcgcgtggcgagtttgct
gtgcgcggtgggattgtagacgtgttcccaccgactctttcgcatcccgttcgcctcgac
ttctttggtgatgagctcgaggagatccgctacttttctgtcgcggatcaacgctcgctg
gaggagaccctcgaggtcgttgacgcgcccgcgtgcagggaaattctcttgacggacgag
gtgcgcgagagggcgcgcaccgcgattgagcagcttcccggcgcggccgatcttctcggt
cgtctcgcagaggggatcgccgttgagggcatggagtccctgaccccgcttctcgtgggg
gagatggtcagcctcgtggatgtgcttccggcaaagtcgagtgtcgttttcgtggagccg
gagcggatccgcacccgcgtggaggagctcgtgcgcacgacggacgagttccttgaagcc
gcatggaccagtgcggcacagggcggcgctgtaccgatcgacgtggcgcaagcaagtttt
tcgacgcttgaagacacgctcggagagcttgaagctcggcagattcccgtctcgagtatt
gcaccgtttgggctcgatgctgatctcacatcacacgcaaagccgcacccgggctatggt
ggctcgattgcgaatgccgcgcgtgatctcgcacagcacgtgagcgaggggtggcggatc
gttttgacgacggcgggcgcgggaaccgggcgccacattgccgaggcgctcacgcaggcc
ggagtcgcggcgcgctttagcgccgacctcgacgaggagctttccgcgactcacgtgagc
attacgaccgggccaattaccgagggcgtcctcctcgaggacgtcaagattatgctcatg
tgcgagcgggacatgacgggcaaatccgctgcgcgccgctccagcagcaagaagctcgcc
tcgcgcaggcgtgcgagcgttgacccgctccagctttctcccggcgattacgtggtgcac
aatcaccatggagtcgggcggtttgtggagatgacgagccgcaccgtgggcacgggcgat
aagcgtgcgacacgcgagtatatcgtgatcgagtatgcgagctcgaagaaaggccagccg
ggtgaccggctgtacgtgccgagtgatcagcttgatcaggtcacgaagtacgttggcggc
gagacgccgagcgtgaacaagatggggggaagcgactggtcgaagactaaatcgcgcgca
cgcaaagccatccgcgagatcgccgacgagctcgtgcggctctatagcgaacgccagcga
agctcaggctttgctttttcgcctgacacaccgtggcagcatgaactcgaggatgctttc
gaatatacggaaactcctgatcagctctcgacgatcgacgatattaagcgggacatggaa
aagcctctcccgatggatcgtctcgtgtgtggcgacgtgggctatggcaaaaccgaggtt
gcggtacgcgcagcattcaaggctgtccaagacggtaagcaggttgcggttctatgcccc
acgacccttctcgcccagcagcacatcgaaacgtttactgagcgctacgcgggattcccc
gtgaacgtgcgaggcctttcgcggttccagaccccgtccgagtcgaaagctgtgatcgaa
ggactcaaggacggctcggttgacgtggtgattggcacccaccgcctgatcacagggcag
gtgcgattcaaggatcttggcctcatcatcgttgatgaggagcagcgctttggggttgaa
cacaaggaaacgctcaaggcgcttcgcacgaatgttgacgtgctctcgatgtcggcgacg
ccgatcccgcgaactctcgaaatggccgtgaccggcattcgagaactttctacgcttgcc
acggcccccgaggaacgccaccccgtgctgacgtacgtcggtgcccacgaggacgcacag
gtgaaggccgcgattaggcgcgagctgcttcgtgagggtcaggtgttctacattcacaac
cgcgtggaagatattgaccgtaccgccgagcacttgcgcgagctcgtgcccgatgcgcgc
gtggaggttgcccacggcaaactgaatgaggctcagctcgagcgggtcattcttgacttc
tgggaaaagcgcttcgacgtgctcgtgtgtacgacgatcgtcgagacgggactcgatatc
tcgagcgcgaacactctcattgttgaaaacgccgaccgttttgggctctcgcagcttcac
cagctccgcggccgcgtgggtcgttcgcgagatcgtgcctacgcctacttcctgtatccg
ccggcaaaaccgctcacggaaacggctcacgatcgcctgacgacccttgcaacgcattcc
gagcttggcgccggcatgcaggtcgcgatgaaagacctcgagatccgcggcgcgggcaac
ctcctcggcggggagcagtcggggcacatcgcgggcgtcggctttgacctgtacgtgcgc
atggttggcgaggctgtcgcggcgttcaagggtgaactcgaccaaggtgcgaaggagacg
aaggtcgaactcccactcaacgcacacatccccgtcgaatacatcgattccgagcgtctg
cgcctcgaagcgtattcaaagatttcggcggcgaagagcgcggacgaactcgaaggcgtg
cgtgccgaggtcgaagaccgctacggcaagccaccagccgaggtcgagcgactcttccac
gtcgcgcgtttccgcttggatgcctccgaggtgggcatcgacgaggtgcaggtgcaaggc
aagatgattcgttttgcccacgtcgaagtctccgacagcgtccaattgaagcttcgccgg
ctgtacccgggaactgttctcaagcctgctcttcgccaggtgctcattccacacccgcga
acccagcgcattgggggcattccgcttgctgatgaggaactgcttgagttttgtcgcggc
gtgctggcgcacctcaagcccgagtgggcgaaagaacgcggcatcgaggtcgctgagcaa
ccgtcggaaccttcccgcccccgtactttcggtcaacgttcgccacgcgcgagcaggctc
gagaattcgcgtcgcgacgcgccgcaagggacacgccaggcgggtcttggacgaaaggga
catgcgtga
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