Daktulosphaira vitifoliae (grape phylloxera): 126904949
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Entry
126904949 CDS
T09738
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03013
Nucleocytoplasmic transport
dvt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126904949
03015 mRNA surveillance pathway
126904949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126904949
Enzymes [BR:
dvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126904949
5.6.2.5 RNA 5'-3' helicase
126904949
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126904949
mRNA cycle factors
Common to processing body (P body) and stress granule
126904949
BRITE hierarchy
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
ResIII
AAA_22
SLFN-g3_helicase
DEAD
ATPase
AAA_16
nSTAND3
Helicase_RecD
UvrD-helicase
P2
Ribosomal_S13_N
AAA
SRP54
AAA_7
UvrD_C_2
AAA_6
PhoH
HisKA
HerA_C
NTPase_1
Motif
Other DBs
NCBI-GeneID:
126904949
NCBI-ProteinID:
XP_050540311
EnsemblRapid:
LOC126904949
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MQSKDMWKIYHLVFWCGIYFITENDFIRTMAMYCAVVITLLKLIDYCTLFEKTDTKVIQI
NELNAEEDKLPSPRSPHSTVPATNIPCVFSSSKKYGHFFQPLISAECSYNLKLGEKHSFE
CKIVSSQNYNKKSKVRFQMNSKNNVFVVDEELWISSPKMTNAIKGIVTNFDQFMSVVDVE
VNFSIDLPIGTPATLKKSFDKTPYTRMEAALATFSYKYESVSPEVRSMLLGRQQQHSPER
DENLTDNSLLAPNLPGLNESQLSAVSHALRTPVSLIQGPPGTGKTVTCANIVYNLSKSGT
VLVCAPSNNAVDNLANAVAKTGIDVVRLVKKTKETVKSDLSNIYLSEQIKKLAGHSEFKT
LQGQIDQGVELSPNERRDYNYLRRMAEIDCLANCRVVCTTCSGAGDNRLEKINFSSVVVD
ECAQGLEPECIIPITHGAKKVVLIGDHCQLGPVVTCPDTRNGGLHRSLFERLVAAGLQPV
RLTVQYRMHPEISEYASQTMYESTIRNGVTCSDRTGSIDFTWPNPNVPMVFYSSDANERK
SRSGTSFLNYGEAKVVEQLVAKLLSKGATPNQIGVITPYEGQRSLLKQILNKNKGVEVSS
VDAFQGREKEYIIISCVRSNERNVVGFLNCVRRLNVALTRAKFGLFLVGNANFLVKNPTW
KNLLRYYDDRNLIVEGTVDDMCTAHIKFD
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcaaaggatatgtggaaaatttaccatcttgtattttggtgtggaatttatttc
attacagaaaatgacttcatcaggacaatggcaatgtattgtgctgttgtcataacactg
ttgaaacttattgattactgtacactttttgagaaaacggacacaaaagtcatacaaatt
aatgaattgaacgctgaagaagataaactaccatcgccacgttctccgcattcaactgtc
cctgcaacaaatattccctgtgtattttcttcgtcaaaaaaatacgggcattttttccag
ccattaataagtgctgaatgctcgtacaatttaaaactgggcgaaaaacattcgtttgaa
tgcaaaatcgttagctctcaaaactacaataaaaaatcaaaagtacgttttcaaatgaat
agtaaaaataatgtatttgtagtagacgaagaattatggatttcaagtccaaaaatgacc
aacgccataaaaggaattgttacgaactttgaccagttcatgagcgttgttgatgtagaa
gtaaatttttcaatcgacttgcctattgggacaccggcaactttaaaaaagtcatttgat
aaaaccccttacactcggatggaagcggcacttgctactttttcttacaagtacgaatct
gtttcacctgaagtaagatcaatgttgctcggacgtcaacaacaacattcacccgaacgt
gacgaaaatctgacagataacagcctattagctcccaatttacctggtttgaatgagtca
cagctgtctgctgtgagccatgccctacgcacgccagtttctctaatccaagggcctccc
ggtactggaaaaacggttacttgtgccaatattgtatacaatctgtccaagtccggaacc
gtattagtttgcgcaccgtcgaacaacgctgttgataacttggcaaatgccgtggctaaa
acaggcatcgatgtcgttagacttgtgaaaaaaacgaaagagacggttaaaagtgatctt
tcaaatatatatcttagtgaacaaattaaaaagcttgctggtcattcagaatttaaaact
cttcaagggcagattgatcaaggtgtcgagttgagcccaaatgagagaagggactacaat
tatctgagaagaatggcggaaatcgactgtctagcgaattgtcgagtggtgtgcacaact
tgctccggcgccggcgacaaccgtttagaaaaaatcaatttttcttcggtggtcgtggat
gaatgcgctcaaggcttagaaccggaatgcatcattccaatcacccacggagccaaaaaa
gtggtgttaataggtgaccactgtcagttggggccggttgttacgtgtccggacactaga
aacggaggtctgcatcgttctctgttcgagagattggtagctgctggcctacaaccagtt
cgtttaactgtacagtacagaatgcaccccgagatcagcgagtacgcttcacaaactatg
tacgagagtacgattaggaacggcgtaacttgtagcgaccgaactgggtcgattgatttc
acgtggcctaacccaaatgtgccgatggtattttactcttccgatgccaacgaacgaaaa
tcgcgatcgggcacgtctttcttgaactatggagaggcgaaagttgttgaacaactagta
gccaaactccttagcaaaggagctactccaaatcaaattggtgttataactccatatgaa
ggacagcgatcacttttgaaacaaattctaaacaagaacaaaggggtggaagtcagtagt
gtggacgcttttcaaggccgtgaaaaggagtacattattatatcgtgtgtccgctcgaac
gagagaaacgttgtaggtttcctgaactgtgtccgtcggctaaatgtggcacttacgcgt
gcaaagtttggtctttttttagttggtaacgctaactttttggtgaaaaaccctacgtgg
aaaaatttacttcggtattatgacgacagaaatttgattgtcgaagggacagttgatgat
atgtgtacagcacatattaagtttgattaa
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