Daktulosphaira vitifoliae (grape phylloxera): 126905060
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Entry
126905060 CDS
T09738
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03013
Nucleocytoplasmic transport
dvt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126905060
03015 mRNA surveillance pathway
126905060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126905060
Enzymes [BR:
dvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126905060
5.6.2.5 RNA 5'-3' helicase
126905060
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126905060
mRNA cycle factors
Common to processing body (P body) and stress granule
126905060
BRITE hierarchy
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
ResIII
AAA_22
SLFN-g3_helicase
DEAD
ATPase
AAA_16
nSTAND3
Helicase_RecD
UvrD-helicase
P2
Ribosomal_S13_N
AAA
LSM
SRP54
AAA_7
UvrD_C_2
AAA_6
PhoH
HisKA
HerA_C
NTPase_1
Motif
Other DBs
NCBI-GeneID:
126905060
NCBI-ProteinID:
XP_050540409
EnsemblRapid:
LOC126905060
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MAMYCAVVITLLKIIDYCTLFEKTETKVIQINELNAEDDKLPSPCSPHSTVPPTNIPCVF
SSSKKYGHFFQPLISAECSYNLKLGEKHSFECKIVSSQNYNKKSKVRFQMSSKNNVFVVD
EELWISSPKMTNAIKGIVTNFDQFMNVVDVEVNFSIDLPIGTPATLKKSFDKTPYTRMEA
ALATFSYKYESVSPEVRSMLLGRQQQHSPERDENLTDNSLLAPNLPGLNESQLSAVSHAL
RTPVSLIQGPPGTGKTVTCANIVYNLSKSGTVLVCAPSNNAVDNLANAVAKTGIDVVRLV
KKTKETVKSDLSNIYLSEQIKKLAGHSEFKTLQGQIDQGVELSPNERRDYNYLRRMAEID
CLANCRVVCTTCSGAGDNRLEKINFSSVVVDECAQGLEPECIIPITHGAKKVVLIGDHCQ
LGPVVTCPDTRNGGLHRSLFERLVAAGLQPFRLTVQYRMHPEISEYASQTMYESTIRNGV
TCSDRTGSIDFTWPNPNVPMVFYSSDANERKSRSGTSFLNYGEAKVVEQLVAKLLSKGAT
PNQIGVITPYEGQRSLLKQILNKNKGVEVSSVDAFQGREKEYIIISCVRSNERNVVGFLN
CVRRLNVALTRAKFGLFLVGNANFLVKNPTWKSLLRYYDDRNLIVEGTVDDMRTAHIKFD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgtattgtgctgttgtcataacactgttgaaaattattgattactgtacactt
tttgagaaaacggaaacaaaagtcatacaaattaatgaactgaacgctgaagatgataaa
ctaccatcgccatgttctccgcattcaactgtccctccaacaaatattccctgtgtattt
tcttcgtcaaaaaaatacgggcattttttccagccattaataagtgctgaatgctcgtac
aatttaaaactgggcgaaaaacattcgtttgaatgcaaaatcgttagctctcaaaactac
aataaaaaatcaaaagtacgttttcaaatgagtagtaaaaataatgtatttgtagttgac
gaagaattatggatttcaagtccaaaaatgaccaacgccataaaaggaattgttacgaac
tttgaccagttcatgaacgttgttgatgtagaagtaaatttttcaatcgacttgccaatt
gggacaccggcaactttaaaaaagtcatttgataaaaccccttacactcggatggaagcg
gcacttgctactttttcttacaagtacgaatctgtttcacctgaagtaagatcaatgttg
ctcggacgtcaacaacaacattcacccgaacgtgacgaaaatctgacagataacagccta
ttagctcccaatttacctggtttgaatgagtcacagctgtctgctgtgagccatgcccta
cgcacgccagtttctctaatccaagggcctcccggtactggaaaaacggttacttgtgcc
aatattgtatacaatctgtccaagtccggaaccgtattagtttgtgcaccgtcgaacaac
gctgttgataacttggcaaatgccgtggctaaaacaggcatcgatgtcgtgagactcgtg
aaaaaaacgaaagagacggttaaaagtgatctttcaaatatatatcttagtgaacaaatt
aaaaagcttgctggtcattcagaatttaaaactcttcaagggcagattgatcaaggtgtc
gagttgagcccaaatgagagaagggactacaattatctgagaagaatggcggaaatcgac
tgtctagcgaattgtcgagtggtgtgcacaacttgctccggcgccggcgacaaccgttta
gaaaaaatcaatttttcttcggtggtcgtggatgaatgcgctcaaggcttagaaccggaa
tgcatcattccaatcacccacggagccaaaaaagtggtgttaataggtgaccactgtcag
ttggggccggttgttacgtgtccggacactagaaacggaggtctgcatcgttctctgttc
gagagattggtagctgctggcctacaaccatttcgtttaactgtacagtacagaatgcac
cccgagatcagcgagtacgcttcacaaactatgtacgagagtacgattaggaacggcgta
acttgtagcgaccgaactgggtcgattgatttcacgtggcctaacccaaatgtgccgatg
gtattttactcttccgatgccaacgaacgaaaatcgcgatcgggcacgtctttcttgaac
tatggagaggcgaaagttgttgaacaactagtagccaaactccttagcaaaggagctact
ccaaatcaaattggtgttataactccatatgaaggacagcgatcacttttgaaacaaatt
ctaaacaagaacaaaggggtggaagtcagtagtgtggacgcttttcaaggccgtgaaaag
gagtacattattatatcgtgtgtccgctcgaacgagagaaacgtcgttggtttcctgaac
tgtgtccgtcggctaaatgtggcacttacgcgtgcaaagtttggtctttttttagttggt
aacgctaactttttggttaaaaaccctacgtggaaaagtttactacggtattatgacgac
agaaatttgattgtggaaggaacagttgatgatatgcgtacagcacatattaagtttgat
taa
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