Diabrotica virgifera virgifera (western corn rootworm): 114325097
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Entry
114325097 CDS
T09922
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Pathway
dvv03013
Nucleocytoplasmic transport
dvv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114325097
03015 mRNA surveillance pathway
114325097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvv03019
]
114325097
Enzymes [BR:
dvv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114325097
5.6.2.5 RNA 5'-3' helicase
114325097
Messenger RNA biogenesis [BR:
dvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114325097
mRNA cycle factors
Common to processing body (P body) and stress granule
114325097
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
ATPase
SRP54
AAA_16
nSTAND3
AAA_22
AAA_7
AAA_10
AAA_5
Motif
Other DBs
NCBI-GeneID:
114325097
NCBI-ProteinID:
XP_050506909
EnsemblRapid:
LOC114325097
LinkDB
All DBs
Position
5:complement(243490120..243531702)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEDADLIGADTQGSECDFTDFTIPSQTQASQHDHAGPKVSGVQ
VNNNIVNKITATTNALGELQFEEDDEEGYFNTKELPDYACKYCGIHEPNCVVMCNLCKKW
FCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFIPAKADS
VVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLTWLVKIPSEQEQLRARQISAQQIN
KLEELWKENVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKES
QTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKTWAGVGHVIKV
PDNYGEDIGIELKNGSGAPVDCGSNFVVDFIWKSTSFDRMQLALRKFAVDDASVSAYIYH
RLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSA
TIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKTNLKVVRLCAKSREAIDSPVSFLALHN
QIRKMEGNTELQKLQQLKDETGELSSVDEKRYRMLKKMAEKELLEAADVICCTCVGAGDP
RLVRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQS
LFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVSAEERKLAKIDFPWPIQD
RPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRSGVKPEQIGVITPYEGQRAYL
VQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVAL
TRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLTNLKESLIQFAKPKKLINSE
NPGSHFMTTSTFDAREAMVPGSVYDRSANQAMNGQFNYPSHRGVPLDVFGRTHDPISYIS
PERAQASMNLPVPVGMFMNMAHIPPRFYNQHQQALQARQQQNHRNRKPPQRQKGKGGNLS
QDHTQPFSQSLQLTQGMSQPGLSQPGFSLSQPGLSQAELSQDPYMAEYQSQMDGLLSQDS
TYQGDRSAFYQPSAQFSQPY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggatgcatacggaccgagttcccaaacactcacgtttttggacaccgaagat
gcagatttaataggagcggatactcagggctccgaatgtgactttaccgattttacaatt
ccctcgcagacacaggcctcccaacatgaccatgctggccccaaagtgtctggagtacag
gtaaataacaacattgtcaacaaaatcacagctaccactaacgctctgggagaattacaa
ttcgaggaagatgatgaagagggatatttcaatactaaagaactgcctgattatgcctgc
aagtactgtggcatccatgaaccaaactgtgtcgtcatgtgcaacctctgcaagaagtgg
ttctgcaatggaagaggaaacacttctggaagtcatatcatcaatcatttggtcagagcc
aaacataaggaagttaccctacacaaagatgggccattaggagagacaattttggaatgt
tacagttgtggagttcgcaacgtttttgtgttgggtttcataccagctaaagcagattct
gtagttgtcctactgtgcagacaaccttgtgctgcgcaaaactcgcttaaggatatgaat
tgggatcaagaacaatggaaacctttgattgccgaccgttgttttttgacgtggttagtc
aagataccttcggaacaagaacaattgcgtgctagacaaatttccgcgcaacagatcaat
aaattagaagaattatggaaggaaaatgtcgatgccactttccaggatctagaaaaacct
ggtgtagatgaggagccacaacaggtacttctccgttatgaagacggttaccaataccaa
aacatctttggtccattagtaaagctagaagccgactacgataagcgcctcaaggaatcc
caaactcaagaaaacatcgaagttcgttgggacgtaggcttgaataagaaaactatcgcc
tatttcaccctcgccaaaaccgatggagatatgaagttgatgcacggagatgaattgaga
ttgagatacgttggagaaatgcacaagacatgggcgggagtcggacatgtcattaaagta
cccgataattacggcgaagatataggaattgagttgaaaaacggttctggggctcctgtg
gattgcggaagtaactttgtagttgatttcatttggaagagtaccagttttgatagaatg
cagttggcccttcgtaagttcgccgtcgacgatgcttcagtttccgcttacatataccac
cgactgttaggccacgaagtggaagaagttttatttagatgtcatctccctaaacacttt
tcggcccccaacttacccgatttgaaccgatctcaagtttatgccgtaaaacacgcacta
caacgccctctatcgttgatccaaggtccacctggtactggaaagactgtaacatccgcc
actatcgtttaccaacttgttaagcaaaatggaggaccggttctagtatgtgctcctagc
aacaccgctgtcgaccaactcacggaaaaaatccacaaaactaaccttaaagttgtcaga
ttgtgcgcaaagtcgagggaagcaatcgactcgcctgttagctttttagctttacataat
caaattaggaaaatggaaggcaatactgaactacaaaagttgcaacaactgaaagacgag
acgggtgaattgagttctgtagatgaaaaacggtaccgaatgttgaagaaaatggctgag
aaggaactgttagaagctgcagatgttatctgttgcacttgtgtaggtgctggcgatcct
agactggtcaggctcaaatttcattctatattgatagatgaaagcatgcaggctaccgaa
cctgaatgtatggtacccgttgtcctcggtgtcaagcagcttattctcgtaggtgatcac
tgccaattaggacccgtagtaatgtgcaagaaagctgcgagagctggtctgtcgcagagt
ttattcgaacgattagtagtactaggtatcagaccgttccgtctagaagtccaatacaga
atgcatccagaactgtccagatttccctccaacttcttctacgaaggtagtttacagaat
ggagttagcgcggaggagaggaaactagcgaaaattgattttccgtggcctattcaagac
aggcctatgtttttcttagttacgcaaggtcaggaggaaatcgctgggtctggaacgagt
tatctgaatagaactgaagcttcgaacgttgagaaaattgcgactagatttttaagatcg
ggtgtaaaacccgaacaaataggtgtcattaccccgtacgaaggtcaaagggcgtattta
gtgcaatacatgcaataccaaggatctcttcatagcaaactttaccaagaaatcgaaatt
gccagtgtagacgcttttcaaggtcgagagaaggacataattattatgtcctgtgtacgt
tccaacgaacatcaaggaataggcttcttgaacgatcctcgaaggttaaatgttgcttta
actagggctaaatacggaataatcattgtaggaaatcctaaagttttgtccaaacaaccg
ctatggaatcatctattatccttctacaaggaacagaaagtcttagtcgaaggtccactg
accaatttgaaggaatcgctcattcaatttgccaaacctaagaaattaataaattctgaa
aatcctgggtcgcactttatgaccacttctacgtttgatgccagagaagccatggtaccc
ggaagtgtatatgatcgcagtgctaaccaggcaatgaacgggcagttcaattatccaagc
cacaggggcgtgccgttggacgtttttggtagaactcacgatccaatcagctacatatca
cctgaacgtgctcaagccagtatgaacctaccagtaccagttggaatgttcatgaatatg
gcccatattcctcccagattctacaatcaacaccaacaagcgttacaggctcgacagcag
caaaaccaccgcaacagaaaaccgcctcagagacagaaaggcaaaggcggtaatcttagt
caagatcatacccaacctttcagccaaagtctgcaactgacacaaggcatgtcgcaacct
ggtttgtctcaacctggcttcagtttgagtcaacctggattatcacaagctgaactcagc
caagatccatacatggcggaataccaatcgcaaatggacggattattgtcacaagattct
acataccagggagataggtcagccttctaccagccaagtgcccagttctcccagccctat
tga
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integrated database retrieval system
