Diabrotica virgifera virgifera (western corn rootworm): 114331281
Help
Entry
114331281 CDS
T09922
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Pathway
dvv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114331281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvv03021
]
114331281
03019 Messenger RNA biogenesis [BR:
dvv03019
]
114331281
Transcription machinery [BR:
dvv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114331281
Messenger RNA biogenesis [BR:
dvv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114331281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
114331281
NCBI-ProteinID:
XP_028136601
EnsemblRapid:
LOC114331281
UniProt:
A0A6P7FKR0
LinkDB
All DBs
Position
1:complement(61403872..61452768)
Genome browser
AA seq
1711 aa
AA seq
DB search
MSSSEEIKAEYMSSLADLTFNSRPLINVLTMLAEENSPNAPVIVEAIEEHLSKVNTDVKL
PILYLIDCIVKTVGGIYTSLFNHNIVNMFIGVFKAKLVKDTHKNTPFKVDEKTRAEMFKL
RQTWNEVFPQMKLYAIDVQISLLDPAWPVTAKPPSNSIHLNPRFLKNAPPSSTPTIKTEP
ESSPSDSASPSVNKETLIMQEQLIQKQRELLELQQKKLELEVLQTRVKLQEQYKNNQPQT
GRPHNILLKPEVAKQLVPSLAQHKQNLVNTAMVQQLAQPQAAPTNGTKINPVSSALINAK
PIRDPRLLRQQQKRDQTPSADGNLENQLHQRTALLETNKIVSNKNSVRKHRNDPRLINKD
DTSNQRSDSSKPNHSSKSRSSESAHHKSHKTSRSSSQRGQDTSSLKSSSNSVSIDSSKVK
SDLVKSPVKNKKKEKSDRRPLSREKPGKNDSSPVSNSTTFKNVSMAMKNRNYVRKKVGSA
SPEAVKDEDLRSFGPPEKQPRLESDSNDTISAAPVSKAVEPLPVAVMPPSATMAPKTQST
ILPTSAKDQDVDLRQLPAMVTKKRSSTEISEDVSMPAKKTKTQIFDKLFGDEDTDLRQQL
AINTEQRPKTPPPPIISVSATETKTASPKMGSPKSNFDAVRAKLANATNRDKVLSKSYKK
KPKLEDQDLRPQATTGSPHKTKIIISPEEETSIKSGKMTNEEGSELLNRIILQVEKRKLK
EAKRKDHEESFNVSLQPISDDDLSDTELEKEETNTEGPVDAVMSNESVPERPPISEESLI
PFKDKDERLNSGPPPPPSEFVGHFFPRDGRDTRRFPGPHWRGRGGRRWEPIQPMMSARPW
NSNNWAPVEEFTPALEEMEPIFPNGHVNADEVKSITIDSVSRDIRFYGETAIVFIGWDDP
RELTFQNAGVRKITFNDKDSFVLNFNDDYKEVYCNGNSHIVRLGAPSRELFIDNVPYECF
FGSPGIRIELDGVPTKVHLEGPPPPVNIGKVKRCDLVAGKINMFVDAIHVVPVFLDAKVQ
KFVLQGQTSTLKFVDALKTVLINDVPFDIEYGGLPKPLFIHGKKHFVRFSVLPRDIRPGK
VRLLDMDFPEDTRAADENSQDVPLVTDAYDPAMPISGTMDKPVGSDSPDRNSNSPNSVLK
SIQQNNLDVLSNALSSSTGPAPVSGGYQIENQNSQDSQASSQPFTTLPPILNINEIFQNL
VASGLVKSSPPSKPVEEPPKVVESPKKEMRIEPEVPAATSTPNVAPSKLKKTVLSLKPVT
FNRPETLRVRQNSLYAMLYSGMQCSTCGMRFSPEASMLYSQHLDWHFRQNRRGKRNSRVA
TSRRWYYSLADWKNYEELEDLEEREKNYFDEQKQAEGGNEDAEEEVEVPSVAADPDSTDE
CCMVCREKFDQFFNEEKEEWHLRNAIRMENKTYHPVCYEDYQNSLLEQTLDESKAPEEIE
QPQEESVEKIIPGLEIIIDDDDDIPEEVNGPLSNEILSVESDDSKLVPEATEMPEYEQQE
AAAEGDDDDDVILNEVAPIKIVVDDDDDEIAGERTNVASPPPAMDTEDDGFVEIAGLLSL
PNGKHVKIKAEPVDKEDIPTTPVAEDLSTLTVESSDLEIVEPKPTQHDVASSLDGNADPF
SGVTAVGSAALGGNKIKINISKPLPVINKEKENNLGNDLVPSETYIDPFEPFPPGEEPQP
AALKTALRSARLSKLPPVRKGTELTGLCSLM
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgagttcctcagaggagataaaggctgagtatatgtccagtttggcagaccttaccttc
aacagtaggccattgataaatgtgcttacgatgttggcagaagaaaactcacccaatgcc
cctgttatcgttgaagcaattgaagaacatctctcaaaggtcaatactgatgtcaaactt
cccattctctatctgattgattgcatagtgaaaactgttggaggcatttacacatcgttg
ttcaatcacaatatagtgaacatgttcataggagtttttaaagcaaaacttgttaaagat
actcacaaaaacactccattcaaggttgacgaaaaaacacgagcggagatgtttaaattg
cggcagacatggaatgaggtgtttccccaaatgaaactatacgccatagatgtgcagatc
agtcttttggatccagcatggcccgtgactgccaaacctccgtccaacagcatacatttg
aatcccagatttcttaaaaatgcgcctccttcttcaacgccaacaattaaaacagaaccc
gaaagcagtccctctgattcagcttctccttctgttaacaaagagactcttataatgcaa
gaacagttgatccagaagcagagggaattgttggagttgcaacagaagaaattagagttg
gaagtgctacaaacaagggtgaagcttcaggaacaatataagaacaatcagccacagact
ggtcgtcctcataatattctcttgaagccagaagtagcaaaacagctagtcccatccctg
gcccaacataaacaaaatctagtgaatactgcaatggttcaacaattggcccagccccaa
gctgcacccactaatggcacaaagataaacccagtgagcagtgccctcattaacgccaaa
cctataagagatccaagactcttgaggcagcaacagaaaagagaccagacgccttcagct
gacggtaatcttgaaaatcagttacatcaaaggactgctttattagaaactaataaaatt
gtatcaaataaaaatagtgttcgtaaacatcgaaatgatcctcggttaatcaataaagat
gatacctctaaccaaagatcagattcctctaaacctaaccactcatccaaatcccgtagc
tccgaatccgcacaccacaaatcccataagacatccaggtcttcttctcaaagaggccag
gatacgtcctccctcaaatctagctctaattctgttagcatagattcatctaaagttaaa
agtgatctagtgaaatctccagttaagaataaaaagaaggaaaagagtgataggcgacct
ctcagccgtgaaaagcctggtaaaaatgacagttctcctgttagtaatagcaccacgttc
aaaaatgttagtatggcgatgaagaaccgtaattatgtgaggaaaaaggtgggcagtgcg
agtccggaggctgtaaaggatgaggatctgcgatctttcgggccacctgaaaagcagcct
aggctagaaagtgactcgaacgatacaatatctgcagctccagtctcgaaagcagtagaa
ccattacctgttgcagtgatgcctccatcagcgacaatggctccaaaaacgcagtcaact
attcttccaacctctgcaaaggatcaggatgtggatcttcgtcagttaccggcaatggtg
actaaaaagagatcttcaacagaaatctctgaagatgtatcaatgccagccaagaagact
aagacacaaatatttgacaaattgtttggagacgaagatacagatctaaggcaacaactt
gccattaataccgaacaacggccgaaaactccacctccaccgattatatcggtatcagct
accgaaaccaaaactgcttcaccaaaaatgggctctccaaagagtaattttgatgctgtt
agagctaagcttgcaaatgcaacaaatcgggataaggtgctatccaaatcatataagaaa
aaaccaaaattagaggaccaagacttgaggccgcaagcaaccactggttctccccataaa
accaaaatcatcatctcgccagaagaagagaccagtattaagtccggcaaaatgacaaac
gaagaaggttcagaacttttgaacagaattattctacaagtcgaaaaacgaaaattaaaa
gaagccaagaggaaagatcatgaggagtcattcaatgtttcactgcaaccaatcagcgat
gacgatcttagcgatactgaattggagaaagaagaaaccaatacagaggggcctgttgat
gccgttatgtcaaatgaaagcgttcctgaacgtccaccgatcagtgaagagagcctcata
ccatttaaagataaagatgaaagactgaattctggccctcctccacctccaagtgaattt
gttggacactttttccctagagatggaagagatactaggcgttttccgggacctcactgg
cgaggtcgtgggggaagacgttgggaacccatacaaccgatgatgtctgcaagaccttgg
aactcaaataattgggctccagttgaagaatttacaccagcgctcgaggaaatggaacct
atctttcccaatggacatgttaatgctgatgaggtcaagtcgatcactattgatagcgtt
tctagggatatcaggttttacggggaaacagctattgtattcattggttgggacgacccc
agagagttgacattccaaaatgcaggcgtgagaaagattaccttcaacgacaaggacagt
tttgtgctgaacttcaacgatgattataaagaagtttactgcaatggaaattcacatatt
gtgcggttgggtgctccaagcagagaactcttcatcgacaatgtgccatatgagtgtttc
tttggtagtcctggtatccgaatcgaactggatggagtacccaccaaggttcatcttgag
gggcctccaccacctgtgaatattggcaaagtgaaaaggtgtgatctcgttgcgggcaaa
ataaatatgtttgtcgatgccatacatgttgtacccgtgtttttagacgctaaagttcaa
aaatttgttctacaaggtcagacaagtactcttaaatttgtagatgcattaaaaactgtt
ttaataaatgatgtaccttttgatattgaatatggtggtctccctaaacctttatttatc
catggtaaaaaacattttgtaagattttcagttctacctagagatattaggccaggcaaa
gttaggctgctcgatatggactttcctgaagatacaagggcggcagatgagaatagccag
gatgtaccacttgttacggacgcatatgatcctgctatgcctatctccggaacaatggac
aaacctgtgggtagtgattctccagatagaaattcaaattctccaaattctgtgttgaag
tctatacaacaaaataacttagacgtcctctccaatgcactttcatccagtacaggtcca
gcgccggtttcaggaggctatcaaatagaaaaccagaactcacaagactctcaggctagt
tcccaaccatttacaacgctacctccaattttgaatatcaacgaaatattccaaaatcta
gtagcttctggattagtaaagtcatcaccaccaagtaagccagtagaagagccacctaaa
gtggtagaatcgcctaagaaggaaatgagaattgagcctgaagtacctgccgctactagt
actccaaacgtagcgccctcaaaacttaagaaaaccgtattgagcctgaaaccagtcact
tttaacaggccagaaacgctgagagtacgccaaaacagcctatatgcaatgttatattct
ggtatgcaatgcagtacttgcggcatgaggttctccccagaagctagtatgttatatagt
caacacttagattggcattttcgtcaaaatagaagggggaaacgaaacagtagagttgcc
accagcaggagatggtattattctttagctgattggaagaattatgaagaattggaagat
cttgaagaaagagagaaaaactattttgatgagcaaaaacaagccgagggtggtaatgaa
gacgccgaggaagaagtagaggttccaagtgtcgctgcagatcctgattctacggatgaa
tgttgtatggtgtgcagagaaaaattcgatcaattctttaatgaagaaaaagaggaatgg
catttgaggaacgcaataaggatggagaataagacttatcatcctgtttgttatgaagat
tatcagaattcccttctggaacagacgttagacgaatctaaagcaccagaagaaatcgaa
caaccgcaggaagaaagtgtagaaaaaattatccccggtctggaaatcatcatcgatgat
gatgatgatattcctgaagaagtgaacggacctttatctaatgaaatattatctgtcgaa
agcgatgattctaaattggtgccagaagctactgaaatgccggaatatgagcaacaagaa
gcagccgccgagggagatgatgatgacgatgttattttgaacgaggtggctcctatcaaa
attgtcgttgacgatgatgacgacgagattgcgggagaaagaacgaatgtagcatcccct
cctccagcgatggatacagaagatgatggatttgtggagatcgctggactgcttagtttg
ccgaatggaaaacatgttaaaattaaagcagaacccgtcgataaagaagacattcctaca
acgcccgttgcagaagatctctcaaccctaaccgtggaaagttctgatctggaaatcgtg
gagcctaaacctacccaacatgacgtcgcctcctcgttagacggcaacgcggatcccttc
tccggcgttaccgccgtgggatcggcagccctaggcggtaataaaattaaaattaatatt
agtaaaccattgcctgtgataaataaagaaaaagaaaataatttaggaaatgatttagtt
ccatctgaaacttatatcgatccgttcgagccctttccacccggggaagaaccgcaaccg
gctgcgctcaagactgcccttaggagtgctaggttgtcaaagcttcctccggtgaggaaa
gggaccgagctgaccggcttgtgttctctaatgtga
DBGET
integrated database retrieval system
