Durio zibethinus (durian): 111275166
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Entry
111275166 CDS
T05242
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111275166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dzi03021
]
111275166
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111275166
Transcription machinery [BR:
dzi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111275166
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111275166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
Ribonuc_2-5A
Motif
Other DBs
NCBI-GeneID:
111275166
NCBI-ProteinID:
XP_022716062
UniProt:
A0A6P5WJZ3
LinkDB
All DBs
Position
Unknown
AA seq
1004 aa
AA seq
DB search
MSNELVQKQLPSILERFKALLEQREDELKVSSGGGDHEVGASPSTEEIVQLYEAVLSELT
FNSKPIITDLTIIAGEQREHGEGIADAICARIVEVPVDQKLPSLYLLDSIVKNIDREYVR
YFSSRLPEVFCEAYRRVNPHLHPAMRHLFGTWSTVFPPSVLRQIEMQLQFSQSANPQSSG
VTSFRSSESPRPTHGIHVNPKYLRQLEQQSGADSNTQRGRGTPAGLNLYGLKHTIGYDEF
NSDHTEAPSSHVGVRRLSSTGNVGNTSVAIGANKSQLSSASRVSKPFSPSRTGSDRLLSS
EVDDLPSDYSPRRFVEGEAHPVFDYGHGRAIIRDEETREWQRKHFYDDYRNHSESSLNAY
KHTNGHERQTPRALIDAYGNDRGKGISNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFD
WEDMSPTLADRRSNDFSLSSVPTFGSIGARPAGLESNSRSSGTTQTQLSLVDDSLTIPED
AVSSLSSGRGANQILRSTYPQEAWSSSNLLSQSSHPFHAKGRGKEFQMPFSATGISSLGG
GKVVPCIDKLPEGGSQFVRPPAVVPRTGSSSLDSVSVGTRPSIIPSTTGVWPPVNVHKSQ
PPTTHSNYSLHQHSRSQFDSINPINAVMNQGQNKRSYMPGQFDSFERKEQSLTRVLQFPD
QRPALQQRNQLHATSLQPNFLPSQEVRESFLPSATGPLPPHLLAPSLSHGYTPRMHGAVI
SVVPSNPIPVAQPPLSVPNMPTGSLLLQGGALAPLPPGPPLTSQMIPANHIAGPLHPNQP
QSGAFSGLINSLVTQGLISLTKPTPIQDSVGLEFNADLLKVRHESAISALYTDLPRQCTI
CGLRFKFQEEHSAHMDWHVTKNRMSKNRKQKPSRKWFVSASMWLSGAEALGTDAVPGFLP
TEDVVEKKDDEELAVPADEDQSLCALCGEPFDDFYSDETEEWMYRGAVYMNAPNGSFEGM
DRSQLGPIVHAKCRSESSVVPPDDVVRYDGGNSEDSSQRKRLRS
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatgagctagtgcaaaagcaactgccgtcgatattggaacggtttaaggcttta
ttggagcagcgggaagatgagcttaaggtttccagcggtggtggtgatcatgaggtgggg
gcatcgccgagtacggaggagattgttcaactttacgaggctgtgttatcggaactaact
ttcaattcgaagccgataattactgatctcacgatcattgccggtgaacaacgggagcac
ggcgaaggcattgccgatgctatttgcgcacgaattgttgaggtaccagtagatcagaaa
cttccttcattatatctattagatagcattgtaaaaaatattgaccgagaatatgttagg
tatttctcttcccgtttgccagaggttttctgtgaggcatacaggcgagttaaccctcac
ttgcatcctgctatgcgccatctctttggtacgtggtcaacagtatttccaccttctgtc
ctccggcaaatcgagatgcagttgcaattttctcaatcagctaatccacaatcgtctggt
gtaacttccttccggtcttctgaatctcctcgtccaacacatggcatacatgttaatcct
aagtacttgcggcagttggaacaacagtcaggtgcagatagtaatactcagcgtggaaga
ggcacgcctgcaggtctaaatttgtatggtctaaagcataccattggatatgatgaattt
aattctgatcatacagaggctccatcctcacatgttggagtgcgaagattgagctcaact
ggaaatgtcggtaatacttctgttgcaattggagctaacaagtcacaactttcttcagct
tccagagtttcaaaacccttctcaccatcaaggactggatctgatagacttttatcatca
gaggtagatgatcttccatcagattattctcctagaaggtttgttgagggagaggctcat
cctgtctttgattatgggcatggaagagcaatcattagagacgaggaaacaagggagtgg
cagaggaagcacttttatgatgattatcgtaatcattcagaaagttctttgaatgcgtac
aagcatactaatggacatgagcgtcaaacacccagggctttaatagatgcatatggtaat
gatagaggtaaaggaatttctaacagcaagcctgtacaagttgaacggctggatgtaaat
ggaatgggcaataaggtgactccaaggtcatggcagaatactgaagaggaagagtttgat
tgggaagatatgagccctacattagcagaccgaaggagcaatgatttttcactgtcgtct
gttccaacttttggaagcattggggcaaggcctgctggattagaatctaatagtaggagc
agtggcactactcaaactcagctatcccttgtagatgattctttaacaattcctgaagat
gcagtctcttcactgagttctggtcgtggggcgaatcagattctgcgttcgacttatcct
caggaggcttggagttcctcaaaccttttatctcagtcatcacaccctttccatgccaaa
ggaagaggaaaggaatttcaaatgcccttttcagctactggcatatcctcattaggtggt
ggcaaagttgtcccttgtattgacaaattacctgagggtggttcacaatttgttaggcct
cctgctgttgtgccaagaactggttcttctagccttgactctgtttctgttggaactcgg
ccatccattataccatcaacaactggggtatggcctccagtgaatgttcataaatctcag
ccaccaaccactcactctaattattcactgcatcagcatagtaggagtcaatttgattct
atcaatcctatcaacgctgtcatgaatcagggtcaaaataaacgttcatatatgcctgga
cagtttgatagttttgaaaggaaggagcaaagcttgacaagggtgctacaatttcctgat
caacgccctgccttacaacagcgaaaccaattgcatgcaacttctttgcagcctaacttt
cttccttctcaggaggttcgagaaagtttccttccatctgcaacaggaccattaccacct
cacttactggcaccatcgttgagtcatggatacactccacgaatgcatggtgctgtcatc
agtgtagtcccatctaatccaataccagttgcacagcctcctttatcggtcccaaatatg
ccaacaggctctttgcttttacaggggggagccttagcccctcttcctccaggcccacct
ctgacatctcaaatgatacctgccaatcatattgcaggtccactgcaccctaaccaacca
cagagtggtgcattttctggtttgattaattccctcgtgactcaaggtttgatctcattg
acaaaaccaacccccatacaggattctgtgggacttgagtttaatgcagatctcctcaag
gtgcgacatgagtctgcaataagtgctttatacactgatcttccgaggcagtgcacaata
tgtggccttcggttcaagttccaagaggaacacagtgctcatatggattggcatgtgacc
aaaaaccggatgtctaagaaccggaagcagaaaccttctcggaagtggtttgtgagtgct
agtatgtggcttagtggtgcggaagctctgggaactgatgcagttcctggatttttaccc
actgaggacgttgtagaaaagaaagatgatgaagaattggcagtacctgctgatgaagat
cagagcctatgtgcattatgtggtgagccttttgatgatttctatagtgatgaaacagag
gagtggatgtataggggggctgtctacatgaatgcacccaatggatcatttgaaggcatg
gatagatcgcaattaggtcctatagtacatgctaaatgcaggtcagaatctagtgtggtc
ccccctgatgatgttgtacggtatgatgggggaaattctgaggacagtagtcaaagaaaa
agattgcggagttaa
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