Durio zibethinus (durian): 111278258
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Entry
111278258 CDS
T05242
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111278258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dzi03021
]
111278258
03019 Messenger RNA biogenesis [BR:
dzi03019
]
111278258
Transcription machinery [BR:
dzi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111278258
Messenger RNA biogenesis [BR:
dzi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111278258
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
111278258
NCBI-ProteinID:
XP_022720599
UniProt:
A0A6P5WWW6
LinkDB
All DBs
Position
Unknown
AA seq
1026 aa
AA seq
DB search
MESEKILLFQENPRNLSSFPATNNNSSNSSKAMSNELAQKQLPSILERFKALLKQREDEL
RVSGGGGGDDEVGATPSTEEIVQLYEAVLSELTFNSKPTITDLTIIAGEQREHGKGIANA
ICVRIVEVPVEQKLPSLYLLDSIVKNIGREYVRHFSSRLPEVFCEAYRQVNPNLHPAMRH
LFGTWSAVFPPSVLSKIEMQLQFCQSDNQQSSGVTALRSSESPRPTHGIHVNPKYLRQLE
QQSGADSNPQNVRGASAGLKLYGQKHSIGYDEFDSDHTEVPSSHVGVQRLSTTRNIGRTS
VAIGANKSQFSPASRVSTIGSDRLLSSEIDDLVSDDSPRRFVEGASPSRPVSDYEHARAI
IRDEETRERQRKHFYDDYYNRSESSLNAYKLSNGHERQTPRALIDAYGNDRGKGISNSKP
LQVERLDVNGMGNKVTPRSWQSTEEEEFDWEDMSPTLADHRSNDFSLSSVPTFGSIGARP
ARLESNSRSSHTTQTQLSLFDDSSAIPEDSVPSLSSGHGSNRILHSHHPPEAWNSSYLFS
QSSDTLHAKGRGRDFQTPFLPGGISSLGGRKVVPLIDKLPDGGSQFVRPPAVVPRTGSSS
LGPVTIGARPAIIPTTTGVWPPVDVHKSQPPTMHSNYSLQQHNRSQFDSINPINAVRNQG
QNKHSYMPEQFDSFEINKQSLTRVPPDQRPALQKQNQLHATSLQPRFLPSQEVRESLLSS
VTTPLPPRLLAPSLNHGYTPQIHGAVISMVPSNPIPVAQPPLSIPNMPTGSLHLQGGALP
PLPPGPPPASQMMPATQNAGNQSQSGAFSGLISSLMVQGLISLAKPMPIQDSVGLEFNAD
LLKVRYESAISALYADLPRQCTTCGLRFKFQEEHSSHMDWHVTRNRMSKHRKQKPSRNWF
VSASMWLSGAEALGTDAVPGFLPTENIVEKDDEELAVPADEDQNACALCGEPFDDFYSDE
MEEWMYRGAVYMNAPNGSFDGMDRSQLGPIVHAKCRSESSVVPPEDFVRYDGGNSEDTSQ
RKRLRS
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagagaaaatcctacttttccaagaaaaccctagaaatttatcatctttccct
gcaaccaataacaacagtagcaatagcagcaaggccatgtccaatgagctagcccaaaag
caactcccatcgatattggaacggtttaaggctctattgaagcaacgggaagatgagctt
agggtttccggcggtggtggtggtgatgatgaggtgggagcaacgccgagtacggaggag
attgttcagctttacgaggctgtgttatcggaactaactttcaattcgaaaccgactatt
acggatctcacgatcatcgccggtgaacagcgggagcacggcaaaggcattgccaacgct
atttgcgtacgaattgttgaggttccagtagagcagaagcttccttctttatatctatta
gatagcattgtaaaaaatattggccgagaatatgttaggcatttctcttcccgtttgcca
gaggttttctgcgaggcatacagacaagttaaccctaatttgcatcctgctatgcgccat
ctcttcggcacgtggtcagcagtttttccaccttctgtcctcagtaaaatagagatgcag
ttgcaattttgtcaatcagataaccaacaatcatctggtgtaactgccttgcggtcttct
gaatcgcctcgtccaacacatggcatacatgttaatcctaagtacttgcggcagttggaa
caacagtcaggtgcagatagtaatcctcagaatgtaagaggcgcatctgcaggtctgaaa
ttgtatggtcagaaacattcgattggatatgatgaatttgattctgatcatacagaggtt
ccgtcctcacatgttggagtgcaaaggttgagcacaaccagaaatattggccgtacttct
gtagcaattggggctaataaatcacaattttctccagcttccagagtttcaacgattgga
tctgacagacttttatcatcagaaattgatgatcttgtatcagatgattctcctagaagg
tttgttgagggagcctctccatctcgtcctgtctctgattatgaacatgcaagagctatc
atcagagatgaggagacaagggagcggcagaggaagcacttttatgatgattactataat
cgttctgaaagttctttaaatgcatacaagcttagcaatggacatgagcgtcaaactccc
agggctttaatagatgcatatggtaatgatagaggaaaaggaatttctaacagcaagcca
ttacaggttgaacggctggatgtaaatggaatggggaataaggtgactccaagatcatgg
cagagtactgaagaggaagagtttgattgggaagatatgagccctacattagcagaccat
aggagcaatgatttttcattgtcatcagttccaacttttggaagcattggggcaaggcct
gcccgcttggaatctaatagtaggagcagccacactactcaaactcagctatcccttttt
gatgattcttcggcaattcctgaagattcagtcccttcactgagttctggtcatggatca
aatcggattttgcattcacatcatcctccggaggcttggaattcctcgtaccttttttct
cagtcatcagacacccttcatgccaaaggaagaggaagggattttcaaacacccttttta
cctggtggcatatcctcgttaggtggccggaaagttgttcctcttattgacaaattacct
gatggtggttcacaatttgttaggcctccagctgttgttccaagaactggttcttctagc
cttggcccggttactattggagctcggccagccattataccaacaacaacaggggtatgg
cctcctgtggatgttcataaatctcagccaccaaccatgcactctaattattcactgcag
cagcataataggagtcagtttgattctatcaatcctatcaatgctgtcaggaatcagggt
caaaataaacattcatatatgcctgaacagtttgatagttttgaaatcaacaagcaaagc
ttaacaagggttccacctgatcaacgccctgctttgcaaaagcaaaaccagttgcatgca
acttctttacagccacgctttcttccttcgcaggaggttcgagaaagtctcctttcatct
gtgacaacaccattaccaccacgcttactggcaccatccctgaatcatggatacactcca
caaatacatggtgctgtcatcagtatggtcccatctaatccaatacctgttgcacagcct
cctttgtcaatcccaaatatgccaactggctctttgcatttacagggtggagccttgcca
cctcttcctcctggtccacctcctgcatctcaaatgatgcctgccactcaaaatgcaggt
aaccaatcacagagtggtgcattttctggtttgattagttccctcatggttcaaggtttg
atctcattggcaaaaccaatgcccatacaggattctgttggacttgagtttaatgcagat
cttctcaaagtgcgatatgagtctgcaataagtgctttatatgctgatcttccgaggcag
tgcacaacatgtggccttcgattcaagttccaagaggaacacagttctcatatggattgg
catgtgaccagaaaccggatgtctaagcaccgtaagcagaaaccttcacggaattggttt
gtgagtgccagtatgtggcttagtggtgctgaagctctgggaactgatgcagttcctgga
tttttacccactgagaacattgtagagaaagatgatgaagaattggcagttcctgctgat
gaagatcagaatgcatgtgcgttatgtggtgagccttttgatgatttctatagtgatgaa
atggaggagtggatgtataggggtgctgtctacatgaatgcacccaatggatcatttgat
ggcatggatagatcacagttaggacccatagtgcatgctaaatgcaggtcagaatctagt
gtggttcctcctgaagattttgtacggtatgatgggggaaattctgaggacactagtcaa
agaaaaagattgcggagttaa
DBGET
integrated database retrieval system
