Duganella zoogloeoides: SR858_15505
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Entry
SR858_15505 CDS
T09628
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SR858_15505 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dzo03400
]
SR858_15505 (ligD)
Enzymes [BR:
dzo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SR858_15505 (ligD)
DNA repair and recombination proteins [BR:
dzo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SR858_15505 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WQH02483
LinkDB
All DBs
Position
complement(3518813..3521476)
Genome browser
AA seq
887 aa
AA seq
DB search
MTASLKTYKSKRDFTITPEPAEGGAEGGEHLAFVIQKHWASRLHYDFRLELDGVMMSWAV
PKGPSYDTHDKRMAVHVEDHPISYNDFEGTIPARQYGAGKVIIWDKGSWRPLDDPRKGLA
AGNLKFTLHGHKLRGRWVLVRMRGKGEKQEPWLLIKEKDDYARPATEFSVIDEMPDSVKA
LPMPEGAGKLTPVPAKASNTGPGAAATKAAKASNATKTVKVTKTAKDNDANEAAQAANGT
RAATAARPAKAAKAPSKVALPEKLSPQLATLVDGPPSNPQDWLFEIKFDGYRILARVDGK
DIRLITRNGNDWTHKLQPLQKALTSMKLPPGWYDGEIVVHNDAGRPDFGLLQNAFDANAP
GDIVYFLFDAPYLDGRDLRGTPLEERRAQLQAVLDQRPNDTVRYSAALAAAPEDMIAAAC
SMGLEGIIGKRRDASYTARRSGSWIKLKCGQRQEFVIGGYTDPQGARSSFGSLLLGTYDA
DGALRYAGNVGSGFDGDALRDLKAKMDKLAVAKSPFAASREIDRKAHWLKPTLVAEVAFG
EWTSAGSIRHAVFKGLRTDKQATAIVRELPAHLKEEPAVTDTDTESMVARKLPASLKVTN
PDRVIDKQTGATKIDLVRYYALVGALMLPHLKGRPVSLVRAPAGVGGELFFQKHADTDKM
DGVRNLKQSLDPGHAPMLEVATQKGLLSAAQWNVVELHTQNANATTYEKPNRMVFDLDPG
KGIDWKQVQEAAMLMKAFLDHLGLPAFLKTSGGKGLHVVVPIKPGYGWDDVKAFSQAIVA
HMAHNIPERFVLKSGPSNRVGKIFIDYLRNGRGSTTACAWSARARPGLGISVPVSWEELG
ELRGGDHWTVATVHTRLDVGNAPWDGYAKAAKGLAPAMKMLDFKPEK
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgacagcctctctcaaaacctacaagtccaagcgcgacttcaccatcaccccggaaccg
gccgaaggcggcgccgagggcggtgaacacctggcgttcgtgatccagaaacactgggcc
agccggctccattacgacttccgcctggaactcgacggcgtgatgatgagctgggccgtg
cccaaggggcccagctacgacacccacgacaagcgcatggcggtgcacgtggaagaccac
ccgatttcgtacaacgacttcgaaggcacgatcccggccaggcaatatggcgccgggaaa
gtgatcatctgggacaagggcagctggcggccactcgatgacccgcgcaagggcctcgcc
gccggcaacctcaagttcacgctgcacggccacaagctgcgcggccgctgggtgctggtg
cgcatgcgcggcaagggcgaaaagcaggagccgtggctgctgatcaaggagaaggatgat
tatgcgcggccggccaccgaattttccgtgatcgacgaaatgcccgacagcgtgaaggcg
ctgccgatgcccgagggggcgggcaagttgacgccggtacctgcgaaggcttccaatacc
ggtcccggcgccgcagcgacaaaggcggccaaggccagcaacgcgacgaagactgtcaag
gtcacgaagaccgccaaggacaacgacgccaacgaggctgctcaagctgcgaacggcacc
agggctgcaacggcagccagacctgcaaaagcggccaaggcgccctccaaagtcgcgctg
cccgaaaaactgtcgccccaactggccacgctggtggacggcccgccgtcaaatccgcag
gactggctattcgagatcaagttcgacggctaccgcatcctggcgcgcgttgacggcaag
gatattcgcctgattacccgcaacggcaacgactggacccacaagctgcagccgctacaa
aaagcgctgaccagcatgaagctgccgcccgggtggtacgacggcgagatcgtcgtgcac
aacgacgcaggccggcccgacttcggcctgctgcaaaatgcctttgacgccaacgcgccg
ggcgacatcgtctacttcctgttcgacgcgccatacctcgatggccgcgacctgcgcggc
acgccgctcgaggaacgccgcgcgcagctgcaagcggtgctcgatcaacgccccaacgac
acggtacgctacagcgccgcgctggccgccgcgccggaggacatgatcgctgccgcctgc
agcatgggcctcgaaggcatcatcggcaagcggcgcgatgcgtcttacaccgcgcggcgc
agcggcagctggatcaagctcaaatgcggccagcgccaggagttcgtcatcggcggctac
accgacccgcagggtgcgcgcagcagcttcggctcgctgctgctgggcacctacgacgcc
gatggtgcattgcgctatgcaggcaacgtgggcagcggtttcgatggcgatgccttgcgc
gacctgaaggcgaaaatggacaagctggcggtcgcaaaaagcccgttcgcagcgagccgc
gagatcgaccgcaaggcgcactggctcaagcccacgctggtggcggaggtggcgttcggc
gaatggaccagcgccggctcgatccggcacgcagtgttcaaggggctgcgcacggacaag
caggccacggccatcgtgcgtgagttgcctgcgcacttgaaggaggaaccagcagtgacg
gataccgatactgaatcgatggtggcgcgcaagctgcccgcatctctcaaggtcaccaac
ccggaccgcgtgatcgacaagcaaaccggcgccaccaagatcgacctagtacgctattac
gcgctggttggcgcgctgatgctgccgcatttgaaaggccgtcccgtctcgctggtgcgc
gcaccggcgggtgtcggtggcgaactgtttttccagaagcacgccgataccgacaagatg
gacggggtcaggaacctcaagcagtcgctcgatcccgggcacgcgccgatgctggaagtt
gcgacgcaaaagggcctgctgtcggcagcgcaatggaacgtggtggagctgcacacgcaa
aacgccaacgccaccacgtatgagaagcccaatcgcatggtgttcgatctcgacccgggc
aagggcatcgattggaaacaggtgcaggaggctgccatgctgatgaaggccttcctcgac
cacctgggcttgccggcatttttaaaaaccagcggcggcaaggggctgcacgtggtcgtg
ccaatcaagcccggttatggctgggatgacgtgaaggcattctcgcaggcaatcgtcgcg
cacatggcgcacaacatccccgagcgcttcgtgctcaaaagtgggccaagcaaccgggta
gggaagattttcatcgactacctgcgcaatggtcgcggctccaccaccgcgtgcgcctgg
tcggcccgggcgcggcccgggctggggatttcggtgccggtgagctgggaggaactgggc
gagctgcgcggcggcgaccactggacggtagccaccgtgcacacgcggctggacgtgggt
aatgcgccgtgggatggctatgccaaggcggccaagggactggccccggcgatgaagatg
ctcgactttaaaccggagaagtga
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