Ensifer adhaerens OV14: OV14_2782
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Entry
OV14_2782 CDS
T03054
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ead
Ensifer adhaerens OV14
Pathway
ead03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ead00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OV14_2782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ead03400
]
OV14_2782
Enzymes [BR:
ead01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OV14_2782
DNA repair and recombination proteins [BR:
ead03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OV14_2782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHK44338
UniProt:
A0AA86AVU2
LinkDB
All DBs
Position
1:2676528..2680037
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AA seq
1169 aa
AA seq
DB search
MLAGLDPKKIVAATREVTIGPVPSGAEALVLADLARAGAPIAYILSDGQRIADLEQVLGF
VAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRKKPHAAIVLVTVNAALQK
ISPQDVIESLAFSARPGNQVRMDDVAARLERNGFERVATVREVGEYAVRGGILDVFVPGS
GDPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFG
ATTRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLEGFRIVTDHVAREAAAERSKL
ILDYYDARHTAASPGRSLATQGTPYKPVPPEFLYLNAEGFTAALVERSAVRLTPFNEQEG
EVRQVVTVDARQGARWAKSAGEGEAESDRVNVFDQAVKYIAEKRSKGFKVVVSGWSEGSL
DRLLQVLVEHGLGNIRQIKALADVNTLKSGEAAAAVLSLEAGFETGDLVVIGEQDILGDR
MVRRSKRRKRGADFIAEVAGLDEGSYVVHAEHGIGRFVGLRTIEAVGAPHDCLELLYADN
AKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHT
RHAHVLVAQDGAYDEFVARFPYDETEDQLSSIDAVREDLGSGRPMDRLVCGDVGFGKTEV
ALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFTERFRGLPIRIQQASRLVGSKELALTKK
EVADGKTDVVVGTHALLGTTVNFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLALTGVRELSLITTAPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCP
RLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGQYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTATAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEVHDTGW
SPQISVGTPVMIPEHYVPDLHLRLGLYRRLGELTDLKEIDGFGAEMIDRFGPLPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQLRNKEFPNPAALVGYIAKQGTLAKIRPDHSIF
FQRELVTPEKRLSGAAMVMTQLAGLAKQV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgctggctggccttgacccgaagaagattgtcgccgcgacccgtgaagtcacgattggc
ccggttccatccggcgccgaagcgctggtgcttgccgatctggcccgcgccggtgcgccg
atcgcctacattctttccgatggccagcgcatagccgacctggagcaggtcctcgggttc
gttgcccccgatataccggtcctgaccctgcctgggtgggactgccttccctatgaccgg
gtatctccgagtgccgatacctcggcgcgcaggcttgcggccctcagcgctctgatcgcc
caccgcaagaagccgcatgcggcgatcgtgctggtgacggtcaatgccgcgctgcagaag
atttcgccgcaggatgtgatcgaaagcctcgctttctccgcgcgtcccggcaaccaggtg
cgcatggacgatgtcgcggcgcgtctggaacgcaacggcttcgagcgcgtggcgaccgtt
cgcgaagtcggcgaatatgccgtgcgcggcggcattctcgacgtcttcgttcccggcagt
ggcgatccgctgcggctcgatttcttcggcgacacgctcgaaaccatccgctccttcgat
ccggccagccagcgcacgaccggccaggtccgctccctcgacctcaacccgatgagcgag
gtgtcgctgacgccggaaaccattagccatttccgcaagcaatatctgtcgctcttcggt
gccacgacccgcgatgatgcgctctaccaggccgtttccgaggggcgtcgttacgccggc
atggagcattggctgccgctcttctacgatcgcctcgagaccgtcttcgattatctcgaa
ggctttcgcatcgtcaccgaccatgtggcgcgggaagccgcagccgaacggtcgaagctc
attctcgactactacgatgcccgccacacggcagcgtcgccgggcaggtcgctggccact
cagggcacgccctacaagccggtgccgcctgagttcctctatctgaacgcggaaggattt
acggcggcgctagtcgagcgcagcgccgtccggctcacgcccttcaacgagcaggaaggc
gaggtccgccaggtcgtcaccgtcgatgcgcggcaaggtgcgcgctgggcaaagagcgcc
ggcgaaggcgaggcggagagcgatcgcgtcaacgtcttcgaccaggcggtgaaatacatc
gctgagaagcgctccaaaggcttcaaggtcgtcgtatcaggctggagcgaggggtctctc
gaccgcctgctgcaggttctcgtggaacatggccttggcaatattcgccagatcaaggcg
ctggccgacgtcaacacgctgaagtcaggcgaagccgcagcggcggtcctcagccttgaa
gcgggttttgaaacgggtgatctcgttgttatcggcgagcaggacattctcggcgatcgc
atggtccgccgctccaagcggcgcaagcgcggtgccgacttcattgccgaggtcgcgggc
cttgatgaaggcagctacgtggtgcacgccgaacacggtatcggccgtttcgtcggactg
cgcacgatcgaagcggtcggcgcgccgcacgattgcctcgaactcctctatgccgacaac
gccaagctctttctcccggtcgaaaacatcgagctcctgtcccgctacgggtccgaaggg
accgatgcgattctcgacaagctcggtggcgtcgcttggcaggctcgcaaggcgaagctc
aagaagcgtctgctcgatatggcgggcggtctcatccgcatcgccgccgagcgccacacc
cggcatgcgcacgtgctggtggcccaggatggagcctatgacgaattcgtcgcgcgcttc
ccctatgacgaaaccgaggaccagctgagttcgatcgatgccgtgcgcgaggatcttggc
agcgggcggccgatggaccgccttgtctgcggcgacgtcggctttggcaagacggaggtt
gcgctgcgggcggccttcatcgcggcaatgaatggggttcaagttgctgtcgtcgtgccg
acgacgctgcttgcgcggcagcatttcaagacattcaccgaacgttttcgcggcctgccg
atccgcatccagcaggcgtcgcgccttgttggctccaaggaactggcgctgaccaagaag
gaagtagctgatggcaagaccgatgtcgtggtcggcacccatgccctgctcggaacgacg
gtcaatttcgccaaccttggcttgctgatcatcgacgaggagcagcatttcggcgtcaag
cacaaggaacggctgaaggagctgaagtcggacgtgcatgtgctgacgctgtcggcgaca
ccgatcccgcgcacgctgcaactggcattgaccggggtgcgcgaactgtcgctcattacc
acggcgcctgtcgaccgcatggcggtgcgcaccttcatttcgccgttcgacgcgctggtg
atccgtgagaccttgatgcgcgagcattatcgcggcggccagagcttctatgtctgccca
cgcctcagcgatctctcggagatccatgacttcctgaaatccgatgtaccggagctgaag
gtcgccgtcgcccacggccagatgccggcaaccgaactcgaagacatcatgaacgccttc
tatgaagggcagtatgacgttctgctgtcgacgaccatcgtcgaatccggcctcgatgtg
ccaacggccaataccttgatcgtgcatcgtgccgacatgttcggcctggcgcagctctac
cagcttcgcggccgcgtcggtcgttcgaaggtgcgcgccttcgcgctgttcacgctaccg
gtcaacaagacgctgacggcaacggccgagcggcggttgaaggtgttgcagtcgctggac
acgctcggcgccggcttccagctggcaagccacgacctcgacattcgcggcgccggcaac
ctgctcggcgaagaacagtccggccatatcaaggaagttggcttcgaactctatcagcag
atgctcgaggaagcggtcgctgagctcaagggtgaggaagaggtccacgataccggctgg
tcgccgcaaatctctgttggcacgccggtgatgatcccggaacattatgtgccggatctg
catctgcggcttggcctttaccgccgccttggcgaactgacggacctcaaggagatcgac
ggtttcggcgcggagatgatcgaccgcttcggcccgctgccgatcgaggtgcagcacctc
ctgaagatcgtctatatcaagtcgctctgccgcacggccaatgtcgaaaagctcgatgcc
ggcccgaagggcgtcgtcgtgcagctccgcaacaaggaattcccgaacccggcagcgctg
gtcggctacatcgccaagcagggcacgctggcgaagatcaggccggatcacagcatcttc
ttccagcgcgagctggttacgccggaaaagcgcctctcgggcgcggcgatggtgatgacg
cagctcgcagggttggcgaaacaggtttaa
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