Ensifer adhaerens Casida A: FA04_28305
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Entry
FA04_28305 CDS
T04507
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eah
Ensifer adhaerens Casida A
Pathway
eah03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FA04_28305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eah03400
]
FA04_28305
Enzymes [BR:
eah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FA04_28305
DNA repair and recombination proteins [BR:
eah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FA04_28305
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANK76632
LinkDB
All DBs
Position
pCasidaAB:174026..176668
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AA seq
880 aa
AA seq
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MAADKLSTYKKKRDFKQTKEPSGAAAVKPANRLRFIIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLGYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKSPE
EALKKGDLKFVLQGKRLNGSFVLVRMRNDRDGGKRTNWLLIKHHDDHSVEENGAAILDEN
MTSVASGRTMEQIASGKGRKPKPFMMASGEVEADAVWDSKQGRAAGKRKERGRTDVAAST
GVDLPDFIAPQLCETVERPPVGKNWLHEIKFDGYRIQMRVADGEVMLKTRKGLDWTAKYP
EIARASSQLPDCIIDGEICALDDNGAPDFAALQAALSEGTTGNLVYFAFDLLFDGGEDLR
PRPLTDRKARLQELLADATDNPRLRFVEHFETGGDAVLRSACKLSLEGIVSKHADAPYQS
GRTDTWAKSKCRAGHEVVIGGYAKTNGKFRSLLAGVNRGEHFVYVGRVGTGYSAKKVETL
LPKLKAVETTKSPFTGIGAPKNEKEVVWVRPELVAEIEFAGWTADGQVRQAAFKGLREDK
PADEVEAEKPASPATTKTPKPAPMVNNVPRRKGAKAEVMGVLISNPDKPLWPDADDGKAV
TKEELARYHEAVGSWLIEHVRGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQVDRVEGLVAVAQIGGIELHPWNCEPGNPEVPGRLVFDLDPGPDVPFAAVVAAAR
EMRDRLDDLGLVSFCKTTGGKGLHVVTPLAVNARTPLSWAQAKGFARDVCQEMARDNPDL
YLIKMTKSLREGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPKRFT
VRTVPALLTKTIAWEDYCDGQRELEQAIKRLGKQRLRHER
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgacaagctctcaacctacaagaagaaacgggacttcaagcagacaaaggaa
ccgagcggcgcggccgctgtcaagccggccaatcggcttcgcttcatcatccagaaacac
gacgcgacgcgccttcattacgatcttcgcctcgaactcgacggcgtgttcaagtcctgg
gctgtgacgaaggggccgtcacttgatccgcatgacaagcggctggcggtcgaggtggag
gatcatccgctcggctatggggatttcgagggcaccatcccgaaaggccagtatggcggt
ggcacggtcatgctgtgggaccggggctattgggagccggaaggaaacaagtcgccggag
gaagccctgaagaagggcgatttgaaattcgtgctgcagggtaagcgcctaaatggcagc
ttcgtgctcgtgcggatgcgcaacgaccgcgacggcggtaagcgcaccaattggctgctg
atcaagcatcatgacgatcattccgttgaagagaacggcgctgccatcctagatgagaac
atgacctcggtggcttccggacgaaccatggagcagatcgcaagcggcaaggggcgcaag
cccaagccgttcatgatggcgagcggtgaggtcgaggccgacgcagtctgggatagcaag
caagggcgcgcagccggtaaacgcaaagagaggggtcggacggatgtggcggcgtcgacc
ggggttgacttgcccgacttcattgctccgcaactctgcgaaaccgtggagcgcccgccg
gtcgggaagaactggctgcatgagatcaagttcgatggataccgcatccaaatgcgggtc
gctgacggtgaggtcatgctgaagacccgcaaagggctggactggacggccaaatatccg
gagatagcgagagcttcctcccaactgcccgactgcattatcgacggcgagatctgcgcg
ctcgacgacaatggcgctccggatttcgcggcgcttcaggccgccttgtcggaaggcacc
accggcaacctggtctatttcgcgttcgacctcctgttcgacggcggcgaggatttgcgg
ccgaggccgcttaccgatcgaaaggcgcgtttgcaggagctgctagcagatgcgaccgac
aatcctcgtcttcgcttcgtcgagcatttcgagacgggcggcgatgcggtcctgcgttct
gcgtgcaagctttccctcgagggcattgtctcgaagcatgccgatgcgccctaccagtcc
ggccgtaccgacacctgggcgaaatcgaaatgccgcgccgggcatgaagtggttatcggc
ggatacgccaagacgaatggcaagttccggtcgctacttgccggcgtcaatcgcggtgag
catttcgtttatgtcggccgcgtcggcacaggctacagcgccaagaaggtcgaaacactg
ctgccaaagttgaaggctgtggaaacgacgaagtcgccgttcacggggatcggcgcgccg
aagaacgaaaaggaagtcgtctgggtgagacccgagttggtcgccgagatcgaattcgct
ggctggaccgcagacgggcaagtccgccaggccgccttcaagggcctgcgggaggacaag
ccggccgatgaggtggaggcggaaaagcctgcatcccccgcgacgaccaaaacgcccaag
cccgcgccgatggtgaacaatgtcccgcgccgcaagggcgcgaaggccgaggtcatgggc
gtgctcatctccaatccggacaaaccgttatggccggacgccgacgacggcaaggccgtc
accaaagaagagctggcccggtatcacgaagcggtcggctcttggctgatcgaacatgtc
aggggccggccgtgttcgatcatccgcgcgcctgacggcattggcggcgaacagtttttc
caacgccacgccatgccgggtacgtcaaacctgctggagctggtcaaggtgttcggcgac
aagaagccgtatttgcaagtcgaccgtgtcgaaggcctcgtcgccgtcgcccagatcggc
ggcatcgaactacatccatggaactgcgaaccaggaaatccggaggtgccgggccggctg
gtcttcgacctcgaccccggtccggatgtgccgttcgcggctgtggttgcggccgcccgt
gaaatgcgggaccggcttgatgatctcggacttgtcagcttctgcaagacgactggcggc
aagggactgcatgtggtgacgccgctggccgtgaacgcgcgtacgccgctttcatgggcg
caggcgaagggcttcgcccgtgacgtctgccaggagatggcccgcgataatccagacctt
tatctcatcaagatgacgaaaagcctgcgggaaggccgcatcttcctcgactatctgcgc
aacgaccgcatggcgacggcggtggccccgctgtcgccacgggcgcgtccgggcgccacg
gtgtcgatgccgctaacctggacgcaggtcaaatccgatctcgatccgaagcggttcacc
gtgcggaccgtaccggcgctgctaacgaagacgattgcgtgggaggactattgcgacgga
cagcgcgagctcgaacaggccatcaagcggctcggcaagcaaaggctgcggcatgagcgt
tga
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