Ensifer adhaerens Casida A: FA04_28315
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Entry
FA04_28315 CDS
T04507
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eah
Ensifer adhaerens Casida A
Pathway
eah03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FA04_28315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eah03400
]
FA04_28315
Enzymes [BR:
eah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FA04_28315
DNA repair and recombination proteins [BR:
eah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FA04_28315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANK76634
LinkDB
All DBs
Position
pCasidaAB:complement(177083..178141)
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AA seq
352 aa
AA seq
DB search
MKAKRRSAIPLLDDSGTALQSRPVRRRNRDQPTLPFDPMPGRIEPCLALLRPTPPEGPEW
LYEIKWDGYRLAIHIEPKGVRIITRGGHDWTDRFPRIVEAAKRLDVGTAILDGEAVVLNK
EGHADFGALQRSLGGRGGKRASTEAVFAAFDLLYFDGHDLTKTELSVRRHLLTDFLDGAS
GAVQLSEEAHGDGVELLANACSMGLEGIVAKHRERPYRSGRTGDWIKVKCVQSESFMIVG
YEQSAAARSGIGSLLLAARRGDSWVSVGSVGTGFKAKDAEYLRKTLDKLKTKKPVVPVKG
KNYVFALPTLIAEIEFRGWTVEGNLRHASYKGLREIQDNAAVFDIATLGDRS
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgaagcgccgatcggccatacccttgctcgatgactccggtactgcgctccag
tcgcggccggtccgccgacgcaatcgcgaccagcccactctgcccttcgatccgatgccc
ggccgcatcgagccgtgcctggcgcttctgcggccgacgccgccggaaggaccggaatgg
ctctacgaaatcaaatgggacgggtatcgcctcgccatccacatcgaaccgaagggtgtt
aggatcatcacgcgcggcggccacgactggaccgatcgctttccacggatcgtggaagcc
gcgaagaggctcgacgtcgggaccgccatcctcgatggcgaggccgtggtcctcaacaag
gagggccatgcggacttcggggcgctgcaacgctcgctcgggggccgcggcggcaagcgc
gcctcgacggaggcggtctttgccgcattcgatcttctctattttgatggccacgatctg
acgaagacggagctttcggttcgccggcatctgcttacggatttcctcgacggcgcaagc
ggcgcggtgcagctgtcggaagaagcgcacggtgatggcgtcgagctgctggcaaatgca
tgttcgatggggctcgaaggcattgttgccaagcaccgcgagcggccatacaggtcggga
cgaacaggcgactggatcaaggtcaaatgcgttcaaagtgagagcttcatgatcgtcggc
tatgagcagtccgctgcagcgcgtagcgggatcggcagccttctgcttgccgcccggcgg
ggcgatagctgggtgtcggtgggttctgtcgggaccgggttcaaggcgaaggatgccgaa
tacctgcgcaaaacattggacaagctgaagacgaagaaaccggtcgtgccagtcaagggc
aagaattacgtgttcgcgctgccgacgctgatcgccgagatcgagttccgcggctggacg
gtcgagggaaatctgcgccacgcctcctataaaggcttgcgcgaaatccaggacaatgcc
gcggtgttcgatatcgccacgcttggagaccgcagctga
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