Equus asinus (ass): 106838232
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Entry
106838232 CDS
T04645
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
eai
Equus asinus (ass)
Pathway
eai03030
DNA replication
eai03410
Base excision repair
eai03420
Nucleotide excision repair
eai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106838232 (LIG1)
03410 Base excision repair
106838232 (LIG1)
03420 Nucleotide excision repair
106838232 (LIG1)
03430 Mismatch repair
106838232 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eai03032
]
106838232 (LIG1)
03400 DNA repair and recombination proteins [BR:
eai03400
]
106838232 (LIG1)
Enzymes [BR:
eai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106838232 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
106838232 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
106838232 (LIG1)
DNA replication proteins [BR:
eai03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
106838232 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
106838232 (LIG1)
DNA repair and recombination proteins [BR:
eai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
106838232 (LIG1)
NER (nucleotide excision repair)
Other NER factors
106838232 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
106838232 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
106838232
NCBI-ProteinID:
XP_044616175
LinkDB
All DBs
Position
26:complement(18348677..18397598)
Genome browser
AA seq
912 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNSIRETEPPPKVALKERNGVVPEGDSPVKRPGRKA
ARVLGSEGEEEDEALTPPKDQKPAPDSPKVSPPSPESTPALCSASPARVSLSGIPKRRTA
RKQLPKRAIQDVLEDQSEDEDREAKRKKEEDEAETPTESLTEPEVAKRKEVEEKDRPTTP
PELPENSTEAPTDSVAEPEGAVKQEPQEDQPQPPPRAPKMLSSFFAPRKPAVKKEVKEEE
GSGAPRKEETKGPLDPPSYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLR
MVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGIGDGILLKAVAQATGRQLE
SVRAEAAEKGDVGLVAESSRSTQRLMLPPPALTASGVFTKFQDIARLAGSASTTKKMDVI
KGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGK
TPEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLELLPEHCRLSPGVPLKPMLAHP
TRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDVISRIPK
IKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNG
ESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTL
DVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLACYDEES
EELQAICKLGTGFSDEDLEEHHQSLQALVLPSPRPYVRADGAVAPDHWLDPSAVWEVKCA
DLSLSPIYPAARGMMDGEKGISLRFPRFIRVREDKKPEEATTSAQVAHLYWKQSQIQNQQ
GTDVDSDPEDFY
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggcaaagcaaagaagcca
gagaaggaagcgtccaacagcatcagagagacggaaccccctccaaaggtggcgctgaag
gagcggaatggagtggtgcccgagggcgactctccagtgaagaggccagggaggaaggca
gcccgggtcctgggcagcgaaggggaggaggaggacgaggccctcacgccccccaaagac
cagaagcctgccccggactctccgaaagtctcccctcccagtcccgagagcacccctgcc
ctctgcagcgcctctcctgcacgcgtctccctgtcagggatcccgaagcgccgcacagct
cggaagcagcttcctaaacgggcgattcaggatgtcctggaagatcagagcgaggacgag
gacagggaagccaagaggaagaaggaggaagacgaagcagagaccccgacagaaagcctc
acagagcctgaagtggccaaaaggaaggaagtagaagagaaggaccggcccacgacgccc
ccagagctcccagagaactccacagaggccccgacggacagcgttgccgagcctgagggg
gccgtgaagcaggagccgcaggaggaccagcctcagcctcctcccagagcccccaagatg
ctcagcagcttcttcgccccccggaagcctgcagtcaaaaaagaagtgaaagaagaggag
gggtccggtgccccgagaaaggaggagaccaagggacccctggaccctcccagctacaat
cctgccaagaacaactaccatcccgttgaagacgcctgctggaagccgggccagaaggtc
ccttatctggcggtggcccggacgttcgagaagatcgaggaggtttctgcgcggctccgg
atggtggagacgctgagcaacttgctgcgctccgtggtggccctgtcacccccagacctg
ctccccatcctctacctcagcctcaaccgccttgggccaccccagcagggcctggagctt
ggcatcggggacggcatccttctcaaggccgtggcgcaggccacaggtcggcagcttgag
tctgtccgggctgaggctgccgagaagggcgacgtggggctggtggccgagagcagccgc
agcacgcagaggctcatgcttcccccgcctgccctcaccgcctctggggtcttcaccaag
ttccaggacatcgcccggctcgctggcagtgcttccacaaccaagaagatggatgtcatc
aaaggcctctttgttgcctgccgccactcagaagcccggttcatcgccagggccctgagt
ggacggctgcgcctcgggctggcagagcagtcggtgttggccgccctggcccaggccgtg
agcctcacacccccaggccaagaattccccccggccgtggtggatgctgggaagggcaag
acaccagaggccagaaaaacatggctggaggagcaaggcatgatcctgaagcagacgttc
tgtgaggtgcctgacctggaccggatcgtccccgtgctgctggagcatggcctggaactc
ctcccggagcactgcaggctgagcccaggggtccccctgaaaccaatgttggcacacccc
acccggggcgtcagtgaggtcctgaaacgcttcgaggaggcagccttcacctgcgagtac
aaatacgatgggcagagggcgcagatccatgtcctggaaggcggggaggtgaaaatcttc
agcaggaatcaggaggacaataccggaaagtaccccgacgtcatcagccgcatccccaag
attaaactcccgtcagtcacgtccttcatcctggacactgaagccgtggcctgggaccgg
gaaaagaagcagatccagccattccaagtgcttaccacccgcaagcgcaaggaggtggac
gctgcggagatacaggtgcaggtgtgtctgtacgccttcgacctcatctacctcaatgga
gagtccctggtgcgggagcccctttcccgacgccggcagctgcttcgggagaacttcgtg
gagacggagggcgagtttgtcttcgccacctccctggacaccaaggacacggaccagatc
gccgagttcctggagcagtcggtgaaagactcctgcgaggggctcatggtaaaaaccctg
gatgtcgacgccacctacgagatcgccaagaggtcacacaactggctcaagctgaagaag
gactacctcgatggcgtgggcgacaccctggacctcgtggtgatcggcgcctacctgggc
cgggggaagcgggccggccgctacgggggcttcctgctggcctgctacgacgaggagagt
gaggagctgcaggccatatgcaagcttggcactggcttcagcgacgaggatctggaggag
catcaccagagcctgcaggccctggtgctgcccagcccgcgcccctacgtccgggcggac
ggcgccgtggcccccgaccactggctggaccccagcgccgtgtgggaggtgaagtgcgct
gacctgtccctctcccccatctaccccgcggcccggggcatgatggacggcgagaagggg
atctcccttcgcttccctcggtttattcgcgtccgtgaagacaagaagcccgaggaggcc
accaccagcgcccaggtggcccatctgtactggaagcaaagtcagattcagaaccagcaa
ggcacggacgtggactccgacccggaagatttctactag
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