Erwinia amylovora ATCC 49946: EAM_0228
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Entry
EAM_0228 CDS
T01199
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta-subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eay
Erwinia amylovora ATCC 49946
Pathway
eay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EAM_0228 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eay03021
]
EAM_0228 (rpoB)
03400 DNA repair and recombination proteins [BR:
eay03400
]
EAM_0228 (rpoB)
Enzymes [BR:
eay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EAM_0228 (rpoB)
Transcription machinery [BR:
eay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EAM_0228 (rpoB)
DNA repair and recombination proteins [BR:
eay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EAM_0228 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
CBJ44903
LinkDB
All DBs
Position
280881..284909
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVYQIRDNKLQME
LVPERLRGETASFDIESNGTVYVEKGRRITARHIRQLEKDAVAHIEVPVEYIAGKVVAKD
YIDESTGELLIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIQVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRINYLLVSGGVEAEKLDKLPRERWLELGLSDEDKQNQLEQLAEQYDE
LKHEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVSK
LREFIQRAYDLGTDVRQKVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggaaaacgtccacaa
gttctggacattccttatctcctttctatccagcttgactcgttccagaagttcatcgag
caagatccggaaggtcaatatgggctggaagcggcattccgttccgtatttccaatccaa
agctatagcggtaactctgagctgcagtacgtcagctaccgtttaggcgagcctgtattt
gatgttaaagagtgtcagatccgtggcgtcacgttttctgcccctctgcgcgttaagctg
cgcctggtgatctacgagcgcgaagcgccggaaggcacggttaaagacatcaaagaacaa
gaagtgtacatgggtgaaattccactcatgaccgataacggtaccttcgtcatcaacggt
acagaacgcgttatcgtttctcagctgcatcgtagtcctggtgtgttcttcgacagcgat
aagggtaaaacccactcatcgggtaaagtgctgtacaacgcacgcatcattccttatcgc
ggctcatggctggacttcgagttcgacccgaaagacaacctgttcgtccgtattgaccgt
cggcgtaaactgcctgcgaccatcattctgcgcgcgttgaattacaccactgagcagatc
cttgacctgttcttcgaaaaagtggtttaccagatccgcgacaacaagctgcagatggag
ctggtcccggagcgcctgcgtggtgaaactgcgtcattcgacatcgagtcgaacggcacc
gtttacgtcgaaaaaggccgtcgcattaccgcgcgccatattcgtcagctggaaaaagac
gctgttgctcatatcgaagttccggttgagtacattgcgggtaaagtcgtcgctaaagac
tatatcgacgagagcaccggtgaactgctgattgcagccaacatggagctgtcgttggat
ctgctggccaaactgagccagtcgggtcacaagcgtatcgaaacgctgttcactaacgat
ctggatcacggcccgtacatctctgaaaccgtacgcgtcgacccaaccagcgatcgcctg
agcgcgctggttgagatctaccgcatgatgcgccctggtgagccaccaacgcgtgaagcg
gctgaaaacctgtttgagaacctgttcttctccgaagaccgctacgatctgtctgcggtt
ggtcgcatgaagttcaaccgttctctgctgcgtgacgagatcgaaggttccggtatcctg
agcaaagacgacatcattcaggtgatgaagaagctcatcggcatccgtaacggcatcggc
gaagtggatgatatcgatcacctcggcaaccgtcgtatccgctccgttggcgaaatggcc
gagaaccagttccgtgtcggcctggtgcgcgtagagcgtgcggtgaaagagcgcctgtct
ctgggcgatctggataccttgatgccacaggacatgatcaacgccaagccaatttctgcg
gcagtgaaggagttcttcggctccagccagctgtcacagtttatggatcagaacaacccg
ctgtctgagatcacgcacaaacgtcgtatctctgcacttggcccgggcggtctgacgcgt
gaacgtgcgggcttcgaagtgcgagacgtacacccgactcactatggtcgcgtatgtcca
atcgaaaccccggaaggtccgaacatcggtttgatcaactccttgtctgtctatgcacag
accaacgagtacggtttcctggaaaccccataccgtcgcgtgcgcgatggcgtggtgacc
gacgaaattcattacctctctgccattgaagagggtaactacgttattgctcaggcaaac
accaacctcgacgacgaaggtcacttcgttgacgacctggtgacctgccgcagcaaaggc
gaatcgagcctgttcagccgcgatcaggttgactacatggacgtttccacccagcaggtg
gtttccgttggtgcgtcactgatcccgttcctggaacacgatgacgccaaccgcgcattg
atgggtgcaaacatgcaacgtcaggcggtaccgactctgcgcgctgataagccgctggta
ggtaccggtatggaacgcgcggtagcggtcgactccggtgttactgccgtagcgaaacgt
ggtggtaccgttcagtatgtggatgcatcgcgtatcgttatcaaagttaacgaagacgaa
atgtacccaggcgaagccggtatcgacatttacaacctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtcaacctgggcgaaccgattgaacgcggt
gatgtgctggctgatggtccttcaaccgacctcggcgaactggctctgggccagaacatg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcctggtctccgag
cgcgtggttcaggaagatcgctttaccactatccacattcaggaactggcctgcgtgtcg
cgtgacaccaagctggggccggaagagatcaccgcggatatcccgaacgtgggtgaagct
gcgctctctaaactggatgagtccggtatcgtgtacatcggtgctgaagtgaccggcggt
gacatcctggtgggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgcgctattttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccgaacggcgtgtcaggtaccgttatcgacgttcaggtcttcacccgtgacggtgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
tctgaagagttgcagatcctcgaagctggcctgttcagccgcattaactacctgctggtt
tccggcggcgtcgaagcggaaaaactggacaagctgccacgcgagcgctggctggaactg
ggcctgagcgacgaagataagcaaaaccagctggaacagctggccgagcagtacgacgag
ctgaagcacgagtttgagaaaaaactcgatgccaagcgccgcaaaatcactcagggcgat
gacctggcacctggcgtgctgaaaatcgttaaagtgtatctggcggttaaacgtcagatc
cagcctggtgataaaatggcaggtcgccacgggaacaaaggtgttatctccaagatcaac
ccgattgaagatatgccttacgatgagaacggtacgccggtcgacatcgtactgaacccg
ctgggcgtaccctcacgtatgaacatcggtcagattcttgaaacccacctgggtatggct
gcgaagggcattggcgagaaaatcaacgccatgctgaagaagcaggaagaagtgtccaaa
ctgcgtgagtttattcagcgtgcttacgatctgggcaccgacgtgcgtcagaaagttgac
ctgaacaccttcagcgacgacgaagtgctgcgtctggcagagaacctgaaaaaaggtatg
ccaatcgccactccggtgtttgatggtgcgaaagagagcgaaatcaaagagctgttacag
cttggcggcctgccttcttccggtcagatcaccctgttcgacggtcgtaccggtgagcag
ttcgaacgccaggttaccgttggctacatgtacatgctgaaactcaaccacctggtggat
gacaaaatgcatgcgcgttctaccggttcttacagccttgttactcagcagccgctgggt
ggtaaagcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagca
tacggtgccgcgtataccctgcaggaaatgctgaccgtgaagtctgatgacgtcaacggc
cgtacgaagatgtataagaacatcgtcgacggcaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaggagatccgctcgctgggtatcaacatcgagctggaa
gacgagtaa
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