Erwinia amylovora ATCC 49946: EAM_0229
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Entry
EAM_0229 CDS
T01199
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eay
Erwinia amylovora ATCC 49946
Pathway
eay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EAM_0229 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eay03021
]
EAM_0229 (rpoC)
03400 DNA repair and recombination proteins [BR:
eay03400
]
EAM_0229 (rpoC)
Enzymes [BR:
eay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EAM_0229 (rpoC)
Transcription machinery [BR:
eay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EAM_0229 (rpoC)
DNA repair and recombination proteins [BR:
eay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EAM_0229 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CBJ44904
LinkDB
All DBs
Position
284995..289218
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREESVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEHEKNEHDEWVAKTSIVDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIITEAEAE
VAEIQQQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEVVINRDGVEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILLPRNTLLHEQQCDLLEEHSVDSLKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
INAKSVTNSAGKLVVTSRNTELKMIDEFGRTKESYKVPYGSTMAKGDGEQVAAGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDDLTGLSSLVILDSAERTAGGKDLRPALKI
VDANGNDVMIPGSDMPAQYFLPGKAIVQLEDGIKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPIDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLDGEQVEFSRVKISNRDLESNGKIAATFVRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAAGEAPV
VPQVTADEASASLAELLNAGLGGRDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagatcgctctggcctcgccagatatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaacctgaacgtgacggccttttctgtgcgcgt
attttcgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaagcat
cgcggtgtgatctgtgagaagtgtggcgttgaagtcacgcagactaaagttcgccgtgag
cgcatgggtcacattgaactggcctcgccaaccgcgcacatctggttcctgaaatcgctg
ccttcgcgcatcggtttgctgctggatatgccactgcgtgacatcgaacgcgtcctgtac
ttcgagtcttacgtggtgattgaaggcggcatgaccaaccttgaaaagcgccagatcctg
actgaagagcagtatcttgacgcgctggaagagtttggtgacgaattcgacgctaaaatg
ggtgcggaagcgatccaggccctgttgaaaaacatggacctggaacaagagtgtgaaact
ctgcgtgaagagttgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgtttgtccagtctggcaacaagccagagtggatgatcctgacc
gtgctgccggtactgccaccggatctgcgtccgctggtgccgctggacggcggtcgtttc
gccacctcagatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccggatatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtcgatgcgctgctggataacggccgtcgcggccgtgcgatcaccggttctaac
aaacgtccgctgaaatctttggccgatatgatcaaaggtaaacaggggcgtttccgtcag
aacctgctgggtaaacgtgtcgactattccggtcgttcggttatcaccgtaggtccatac
ctgcgtctgcatcagtgcgggctgccgaagaaaatggcgctggagctgttcaaaccgttt
atctacggcaagctggaactgcgtggtcttgctaccaccatcaaagccgccaagaaaatg
gttgagcgcgaagaatccgtcgtctgggatatcctggatgaagtgatccgcgagcatccg
gtattgctgaaccgtgcacccaccctgcaccgtttggggatccaggcgttcgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcctataacgccgac
tttgatggcgaccagatggccgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggtgaaccgatcatc
gttccttctcaggacgttgtactgggtctttactacatgacccgcgactgcgttaacgcc
aaaggcgaaggcatggtgctgaccgggccgaaagaagcggaacgcgtttaccgcgccggc
ctcgcctcgctgcacgctcgcgttaaggtgcgtatcaccgaacacgagaaaaatgagcat
gatgaatgggttgctaaaaccagcatcgtcgacaccaccattggccgcgcaatcctgtgg
atgatcgtgccaaaagggctgccttactctatcgtcaaccaggcgctgggtaagaaagct
atttctaagatgctgaacacctgttaccgcatcctgggactgaagccgaccgttatcttt
gctgaccagacgatgtacaccggttttgcctatgcggcacgctcgggtgcgtctgtgggt
atcgacgacatggttatcccagagaagaaagtggaaatcatcaccgaagcggaagcggaa
gtggctgaaatccagcagcagttccagtctggtctggttaccgctggcgaacgctataac
aaagtgatcgatatctgggctgcggccaacgaacgcgttgctaaagcaatgatggaaaac
ctctctaccgaagtcgtgattaaccgcgacggcgtggaagagcgtcaggtttccttcaac
agcatctttatgatggctgactccggtgcgcgtggctctgcggcgcagatccgtcagctg
gccggtatgcgtggcctgatggcgaaaccagatggctcgatcatcgaaacgccaatcacc
gccaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggcgcgcgt
aaaggtttggcagataccgcactgaaaacagctaactccggttatctgactcgtcgtctg
gttgacgtcgcgcaggacctggtggtgactgaagatgactgtggtacgcacgaaggcatc
atgatgactccggttatcgaaggcggcgacgtgaaagagccgctgcgtgagcgtgtactg
ggtcgtgtgaccgcagaagacgtgctcaagccgggtactgctgacatcctgctgccacgc
aacaccctgctgcacgaacagcagtgtgacctgttggaagagcactctgttgacagcctg
aaagtgcgctcggtggtcagttgcgaaacggacttcggcgtgtgcgcgcactgctacggt
cgtgatctggcgcgtggccacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtacacagctgacgatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggcagctgaatccagcattcaggtgaagaacaaaggtacgctgaagctg
atcaacgccaagtcggtgaccaactccgcaggtaagctggttgttacttcacgtaacacc
gagctgaaaatgatcgatgaatttggtcgtaccaaagagagctacaaagttccttatggt
tctaccatggcgaaaggtgacggcgagcaggttgcagcgggcgaaaccgtcgcaaactgg
gatccacacaccatgccggttatcaccgaagtgagcggtttcattcgcttcaccgacatg
attgatggccagaccattacccgccagacggatgacctgaccggtttgtcttctctggtg
attctggacagtgcggaacgtactgccggtggtaaagatctgcgtccggcgctgaaaatc
gttgatgctaacggcaatgacgtgatgatcccaggatcggatatgcctgctcagtacttc
ctgccgggtaaagcgattgtccagctggaagacggcatcaagatcagctcgggtgatacc
ctggcgcgtgttccacaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgccgacctgttcgaagcccgtcgtccgaaagagccggcaattctggctgagatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggtgatcaccccgatc
gacggtagcgatccgtacgaagagatgatcccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgcgtagagcgtggtgacgtggtttccgatggcccggaatcgccacatgacatt
ctgcgtctgcgcggcgtgcatgcggtgacgcgttatatcactaacgaagtgcaggaagtt
taccgcctgcagggcgttaagattaacgataagcacatcgaagttatcgtgcgccagatg
ctgcgtaaagcaaccatcgaaagcgcgggaagctctgacttcctcgacggtgagcaggtt
gaattctctcgcgttaagatctctaaccgcgatctggaatccaatggcaaaatcgctgcg
accttcgtgcgcgatctgctgggtatcaccaaggcttctctggcaaccgagtcgtttatc
tctgcggcctcgttccaggaaaccacgcgcgtgctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgccgtaaagcagcgggtgaagcaccagtg
gttccgcaggtcaccgcggatgaagcttctgccagcctcgccgagttgctgaacgccggt
ctcggtggtcgtgacgacgagtaa
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integrated database retrieval system
