Entomobacter blattae: JGUZn3_22660
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Entry
JGUZn3_22660 CDS
T07040
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ebla
Entomobacter blattae
Pathway
ebla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ebla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JGUZn3_22660 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ebla03400
]
JGUZn3_22660 (mfd)
Enzymes [BR:
ebla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JGUZn3_22660 (mfd)
DNA repair and recombination proteins [BR:
ebla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JGUZn3_22660 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNT79467
UniProt:
A0A7H1NUK7
LinkDB
All DBs
Position
complement(2502779..2506273)
Genome browser
AA seq
1164 aa
AA seq
DB search
MATGTYATVWGVPDGYDALLLIQRLEEFKHQAGHLGPHGLIMHVLRDETRMMQLANRLEY
FAPEVEILLFPPWDCLPYDRISPNASVMAERAATLCRLLEGATQPRIVLTTVNALVQRVP
HRSFYEGQGITLTKGESLDQAFLTELLIANGYRRVDTVMEPGEFAARGNIFDLFPASAGD
PVRIDLFGDEIESLRSFDPVSQRSVAQVESFALHPVSELSLDKESISRFRSRWRDQFGPL
ATEDPLYKHISEGYTHLGMEHYLPLFHEQMGTLFDYVAHSAISFDHQVEEVLNLRLEMIE
DHYQARRMPPALGELPYRALPSHLLYLDREGWEANLARHAVVMFSPFAQPEGVIGVEAGG
RQGMVFAQPSAARSSEKTAGPFGVFAQQVEQWQKAGKRVFVTAWSRGSRERIAALLREHK
ISRAQYENWQEAKQGPDDAVGLITVGLERGFIGDKKGCPYVFVSEQDLLGERVIRPRQRQ
RKNSDFIAQASEISEGDLVVHQDYGIGRYEGLRTIEVGSAPHDCLCLMYEGEEKLFLPVE
NIELLSRFGSEQSGVALDRLGSSSWQGRKAKMKQRIRDMAAELIQTAALRATHEAPVVQP
PEGMWDEFCARFPFVETDDQQRAIADVILDLSQGRPMDRLICGDVGFGKTEVALRAAFVV
AMTGAQVAVVVPTTLLSRQHYRTFQARFAGFPIKIAQLSRLVTAKEASQVRKELAEGNIN
IVIGTHALLAKSVKFSALELLIIDEEQHFGVTHKEKLKALCENVHVLTLSATPLPRTLQL
ALTGVREMSLIATPPTDRLAVRTFIMPFDSMIISEALQRERLRGGQVFCVVPRIDDMEPI
AKKLHTIQPDARIVQAHGRLSPVDLEQVMTEFSDGKYDILLSTNIVESGLDMPSVNTLVV
YRADLFGLGQLYQLRGRVGRGKLRGYAYLTWPAGQRLSAASEKRLEIMQTLDSLGAGFTL
ASHDLDMRGAGNLLGDEQSGHIREVGIELYQQMLEDAVSELKSSSESRQDQREWTPNINL
GLPVLIPETYVKDLPVRLGLYRRIGALHEDADIEAMRAELLDRFGDIPSETENLLQIVEL
KRLCRLSGVEKLEAGPKGIVVQFHQNDFSNLEGLLAWIAKNKSGVIRLRPDQKLAYSREI
VFAERIEQARKLLKILEKIGAQKN
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggctacaggcacttacgcaacagtatggggggtaccagatggatatgatgccctgctt
ttgatacagcgcctggaggaattcaagcatcaggccggtcatttaggcccccatggcctg
attatgcatgttttgcgtgatgaaacccgtatgatgcaactggccaaccggctggaatat
tttgctccagaagtagaaatattgcttttccccccttgggattgcctcccctatgatcgt
atttcgcccaatgcttcggttatggcagaacgtgcagcgacattatgccgactccttgaa
ggggcaacacaaccaaggatagtgctaaccaccgtgaatgccttggtgcaaagggtgcct
caccgttctttttacgaagggcaaggcattacccttacgaagggggagagcctggatcag
gcttttctgaccgagttattaattgctaatgggtatcggcgggttgatacggtgatggag
ccaggagaatttgccgctagaggaaatatattcgatcttttccccgcttcagcaggtgat
cccgtaaggatagacctttttggcgatgagattgaaagtttaagaagtttcgaccctgtt
agccagcgttctgtagcacaggtggagagttttgcccttcatccggtttctgagctttcc
ttagataaagagtctatttcacggtttcggagccgttggcgagatcaatttggcccactg
gccacagaagaccctctctataaacatatttcagaaggatatacccatttgggaatggag
cattatctgcctttatttcatgagcagatgggcactctttttgactatgttgcgcattca
gcaattagttttgatcatcaggtggaagaggttttgaaccttcgccttgaaatgatagag
gaccattaccaggcaaggcgtatgcccccagctttgggagagttgccttatagggcctta
ccctctcatcttctctatcttgatcgggaaggatgggaagctaatctggcacgtcatgct
gttgtgatgtttagcccctttgcccagcctgagggggttataggggttgaagcaggaggc
cggcagggaatggtttttgcccagccttcagcggcacgatcttctgaaaaaacggctggt
ccgtttggggtgtttgcccagcaggtagagcaatggcaaaaggctggcaagcgggttttt
gtaacagcctggagccggggctccagagagcgtattgcagcccttcttcgtgagcacaaa
atttccagagcgcaatatgaaaattggcaggaagccaaacaaggcccagatgacgccgtg
ggcctcatcacagtggggcttgagcgtggttttataggggataaaaaagggtgtccctac
gtttttgtctccgagcaggatttgctgggtgagcgcgtgattcgcccacgtcaacgccag
agaaaaaacagtgattttattgcccaggcttctgaaatctctgaaggagaccttgttgtc
catcaggattacggaataggccgttatgaaggcttgcgcaccatagaggtagggagcgca
cctcatgattgcttatgccttatgtatgaaggggaagaaaagctgtttctgccagtggaa
aatattgagctcctaagccggtttggctctgaacaatccggtgtggcactggaccgattg
ggaagttcatcctggcaaggccgcaaggctaaaatgaaacagcgtatccgcgatatggcg
gcagaacttatccagactgcagccttaagggctacgcatgaagcgccagttgtccaacca
cctgaagggatgtgggatgagttttgtgctcgttttccctttgtcgaaactgatgatcag
caaagggctattgccgatgtcattctggatttatcgcaaggccgccctatggaccggctt
atctgtggagatgttggttttggaaagaccgaggttgccttaagggctgcttttgtcgtc
gccatgacaggggctcaggttgccgttgtggttcccacaaccttgctttctcgccagcat
taccgtacatttcaggcgcgttttgcgggtttccctataaaaattgcccagctttctcgc
ttggttacggctaaggaagctagccaggttcgtaaggagctggcagagggtaatattaat
attgttattggtacccatgcgcttttggctaagtcagtaaaattttcagccctggagctg
ttgattattgatgaagagcagcatttcggggttactcataaggaaaaactcaaggcttta
tgtgaaaacgtgcatgtgttaacgctttctgccaccccattgccccgtaccttacagctt
gctcttaccggggtgcgggaaatgagccttattgctaccccacccaccgataggcttgct
gtaagaacctttattatgccctttgatagtatgattattagtgaggcccttcagcgtgaa
aggttacggggtgggcaggttttttgcgtggtacctcgcattgatgatatggagcctatc
gctaaaaaattgcacactattcaacctgatgcccgaattgtccaggctcatggtcgtcta
tctccagtggatttagagcaagtgatgacggagtttagcgatggcaaatacgacatattg
ctttctaccaatattgttgaaagtgggttggatatgccttctgttaatactttggtggtc
tatcgggcagacctttttggattagggcagctttatcagcttcgtggccgggtcggacgg
ggcaagctgcggggttatgcctatttaacctggcctgcgggccagcggctttcagcagca
tctgaaaaacgccttgaaattatgcaaacacttgattcccttggagcaggctttacgctc
gcctctcatgatctagacatgcgaggggctggaaaccttttaggtgatgaacagtctggc
catatccgtgaagtagggatagagctttatcagcaaatgctggaagatgcggtctctgag
ttgaagtcatcttctgagtctcggcaagatcagcgagagtggactcctaatattaattta
ggactacctgtcttaattcctgaaacctatgtaaaagatttacccgtaaggcttggcctt
tatcgacggattggggcattacatgaagatgctgatattgaggctatgcgggcagaattg
ctggatcgctttggcgatatcccttcagaaactgaaaacctacttcagattgttgagcta
aagcgtttatgccgcctttcgggcgttgaaaaacttgaggctggtcctaagggcattgtg
gtgcagtttcaccagaacgatttttccaacctggaaggattactggcttggattgccaaa
aataaaagcggggttattcggctacgccctgatcaaaaactggcctactcgcgtgaaatt
gtcttcgccgagcgtatagagcaggccagaaaactgttaaaaatattagaaaaaattgga
gcgcagaaaaattaa
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