Ectothiorhodospira sp. BSL-9: ECTOBSL9_3036
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Entry
ECTOBSL9_3036 CDS
T04374
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ebs
Ectothiorhodospira sp. BSL-9
Pathway
ebs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ebs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECTOBSL9_3036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ebs03400
]
ECTOBSL9_3036
Enzymes [BR:
ebs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECTOBSL9_3036
DNA repair and recombination proteins [BR:
ebs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECTOBSL9_3036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ANB03387
UniProt:
A0A167BEJ8
LinkDB
All DBs
Position
3319894..3323319
Genome browser
AA seq
1141 aa
AA seq
DB search
MARWGGLSGSALWLAVAEAARRHRGVSLLITPDTQTAERLEQELDFFLAGENLPTLSLPD
WETLPYDVFSPHEDIVSRRLETLYHLPALKRGTLIIPITTLMQRLPPRAWLQSECLMLQQ
GERIDRDKLREGFEQAGYQHVSQVMEHGEYAVRGALMDVYPMGSDAPYRIDLLDDEIETI
RTFDPETQRSRETIHEVRLLPAHEFPLNEAGIKAFRQHYRTVIEGDPQASHIYREVSQGA
APAGIEYYLPLFFEQMETLFDYLPDNTLAVHVGDTLAAAQAFADQVAHRYEQRRHDRERP
LLPPDSLFLGVEEVASSMRGWPTLALVSEAVEDSAQGVAQNADARPPGDLRLQARQAEPA
KAFNDFLQGFPGRVLLMAESPGRREVLLDTLRPLGVVPHQVDSWAEFLASDTSPAITIGP
LQSGLCLPGEGIAVLTESELFGEKARQERRRRKPTRDADAVVRNLTDLHAGAPVVHEDHG
VGRYLGLQKITAGGQETEFLTLEYAGGDKLYVPVASLHLVSRYTGADPEHAPLHKLGTET
WSKARRKAAEKARDVAAELLDIYARRAARQGHAYQSRGAEYTAFAAAFPFEETPDQLSAI
DAVLDDMASERPMDRVVCGDVGFGKTEVAMRAAFVAVQGGKQVAVLVPTTLLAQQHDQNF
RDRFADWPVRIESLSRFGSQKQHQEVMKGLEDGRVDIVIGTHKLIQGNLRFKNLGLVIID
EEQRFGVRHKERLKSLRAEVDMLTLTATPIPRTLNMALSGLRDLSIIATPPEERLTIKTF
VSQWNSALIQEACLREIRRGGQVYYLHNEVQTIEKAARELQEQIPSATIGIAHGQMRERE
LEQVMLDFYHRRYHVLVCTTIIETGIDVPTANTIIINRADKMGLSQLHQLRGRVGRSHHR
AYAYLITPHPSGMTKDAVKRLEAIESLEDLGVGFTLASHDLEIRGAGELLGDEQSGQIQE
IGFTLYNELLDRAVKALKEGKVPDLDHTTSDTTEVDLGLPALLPDDYVPDIHTRLILYKR
LSACQDTDQLREMEVEMVDRFGLLPAQARNLVEATRLKLRLQPLGVRKLEVGPKGGRLIF
HPNPPVDPMSVIQLVQSQPESFRLDGQDTLRFTAEMESLDQRVDAVTRLTGQMHIKQEAV
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttggcccgatggggaggcctttctggttccgccctgtggctcgctgtcgctgaggccgct
cgtcgacaccgtggcgtttccctgctcatcacgccagacacccagactgccgagcgcctt
gagcaggaactggatttcttcctggccggagagaatcttccaaccctgtccctgcccgat
tgggaaaccctgccttacgacgtgttttctccccacgaggacatcgtctcccgccgactg
gaaaccctttaccacctacccgccctgaagcgcggcaccctgatcattcccatcaccacc
ctcatgcagcgcctgcccccccgggcctggctgcaatcggagtgtctgatgctgcaacag
ggggagcggatcgatcgggacaaactcagggaaggattcgagcaggccggctatcagcat
gtgagtcaggtgatggagcacggtgagtatgccgtgcgtggtgccctgatggatgtttac
cccatgggcagcgatgccccctatcgcatcgatctgctggacgacgagatcgagaccatc
cgcacctttgatccggaaacccagcgctcacgtgaaacgatccatgaggtgcgcctgctg
cccgcccatgagttccccctcaatgaggcgggcatcaaggccttccgccagcattaccgc
accgtgatcgagggagacccccaggccagccacatttatcgggaggtgagccagggtgct
gctccggcgggcattgagtactatctgccgctgttcttcgagcagatggaaaccctgttc
gactacctgcccgacaacaccctggccgtccacgtaggcgataccctggctgccgcacag
gcctttgccgatcaggtggcccatcgttacgaacagcgccgtcacgaccgcgaacgcccc
ctgcttccaccggatagcctcttcctcggggtcgaggaagtcgccagcagcatgcgcggc
tggcccacactggccctggtcagcgaggctgtggaagacagcgcccagggtgtcgcacaa
aacgccgatgcgcgcccccctggcgacctgcgactgcaggcccggcaggccgagcccgcc
aaggcattcaatgacttcctgcagggctttccgggtcgggtactgctcatggcagagtcc
cccggtcgtcgcgaggtgctgctggataccttgcgacccttgggggtcgtcccgcatcag
gtggattcctgggccgaatttctggcatcagacacctcccccgccatcaccatcggcccc
ttgcaatccggcctttgcctgcccggcgaggggattgcggtactcaccgaatccgagctg
tttggggagaaggcccgccaggagcgccgtcgacgcaaacccacccgggatgcagatgcg
gtggttcgtaacctcaccgacctgcacgcaggcgcccccgtggtccatgaggatcatggt
gtggggcgctatcttggactgcagaagatcaccgccggtggccaggaaacggagttcctc
accctggaatacgcaggcggcgacaagctctatgtcccggtggcgtcgctgcacctggtg
agccgttataccggggccgaccccgaacatgccccgctgcacaagctgggtacggaaacc
tggtcgaaggcccggcgcaaggcagcagaaaaggcccgcgacgtggctgcggagctcctg
gacatctatgcccgccgggcggcgcgccagggtcatgcctaccagtcacgaggcgcggaa
tatactgcattcgctgccgccttcccgtttgaggaaaccccggaccagctcagcgccatc
gacgccgtgctcgacgacatggcctccgagcgccccatggaccgggtggtctgcggcgat
gtgggctttggcaagaccgaagtcgccatgcgggcggcctttgtggccgtccagggcggc
aagcaggtggcggtgctggtgcccaccaccctgctggctcagcagcatgatcagaacttc
cgcgaccggttcgccgattggcccgtacgcatcgaatccctgtcccgcttcggctcccag
aaacagcaccaggaggtgatgaagggcctggaagatggccgggtggacatcgtcatcggc
actcacaaactgatccagggcaacctgcgcttcaagaacctggggctggtgatcatcgac
gaagaacagcgcttcggggtccgtcacaaggagcgattgaagtccctgcgagccgaggtg
gacatgctcaccctcaccgccacgcccattccccggaccctgaacatggccctgtcgggc
ctgcgtgatctgtcgatcattgccacgccgccggaggagcgtctgaccatcaagaccttc
gtcagccagtggaacagtgccctgatccaggaggcctgtctgcgggagattcgccggggt
gggcaggtgtactacctgcacaacgaggtccagaccatcgagaaggctgcacgggagctt
caggaacagatcccgtcagccaccattggcattgcccatggccagatgcgtgagcgggaa
ctggaacaggtgatgctggatttctaccaccgtcgctaccacgtactggtgtgcaccacc
atcatcgaaaccggcatcgacgtgcccaccgccaataccatcatcatcaaccgggccgac
aagatgggcctgtcccagctgcaccagttgcgggggcgcgtggggcgtagccaccatcgc
gcctatgcgtatctgatcaccccgcatccctcggggatgaccaaggatgccgtcaagcga
ctggaggccatcgagtccctggaggatctgggggtcggcttcaccctggccagccacgat
ctggagatccgcggtgccggggaattgctgggggatgagcagagtggacagatccaggag
atcggcttcaccctgtacaacgaactgctggaccgggccgtcaaagccctcaaggaaggc
aaggtcccggacctggatcacaccacgtccgataccacggaggtggacctgggtctgccg
gcactgctacccgatgactatgtgcccgacatccacacgcgcctgatcctctacaagcgc
ctgtctgcctgccaggacacggaccagctcagagagatggaagtggaaatggtggatcgt
ttcgggctactaccggctcaggccaggaacctggtggaggccactcgcctgaagctgagg
ctgcaacccctgggtgtgcgcaaactggaagtagggcccaagggtggcaggctgatcttc
caccccaatccaccggtggatcccatgagcgtgatccagctggtgcaatcccaaccggaa
agcttccgcctggacggccaggatacgctgcgcttcaccgccgagatggagagcctggat
cagcgcgttgacgcggtcacccgcctgacagggcagatgcacatcaagcaggaggccgtg
gcctga
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integrated database retrieval system
