Ensifer canadensis: J3R84_35880
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Entry
J3R84_35880 CDS
T09166
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ecaa
Ensifer canadensis
Pathway
ecaa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ecaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J3R84_35880 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecaa03400
]
J3R84_35880 (ligD)
Enzymes [BR:
ecaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J3R84_35880 (ligD)
DNA repair and recombination proteins [BR:
ecaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J3R84_35880 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UBI80279
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All DBs
Position
pT173d:complement(585899..588553)
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AA seq
884 aa
AA seq
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MASDKLSTYKQKRDFKVTKEPSGAGKLSPSNRRRFVIQKHDATQLHYDLRLELDGVFKSW
AVTKGPSLDPQDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNRTPE
EALAKGDFKFTLEGKRLHGSFVLVRMRHDRDGGKRTNWLLIKHRDDFSVDENGAAVLEEN
DTSVASGRSMDAIASGKGRKPKPFMVEGGAIGADAVWDSNHGLAAEERQAGAGSRKKSVS
ARRPKSRMPDFIPPQLCETLERPPNGGGWIHEIKFDGYRIQMRVENGKATLKTRKGLDWA
AKFAAIAKSAAALPDAIIDGEICALDEKGAPDFAALQAALSEGETDALVYFAFDLLFTGD
EDLREFALTQRKERLAAILEDAGDDPHLRFAEHFETDGDAVLRSARRLSLEGIVSKKADA
PYQSGRSDTWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVNRGEHFVYVGRVGTGYGAKT
VQTLLPKLQKLEASKSPFTGNGAPKKDRNIVWLKPDLVAEIEFAGWTADGQVRQAAFKGL
REDKPAGEVKAEKPASPSKAAVSDPSTVKPVPNRIRKGGKAEVMDVLISSPEKPLWPDGG
DGKPVTKVELAQYYEAVGSWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELV
TVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPGKPEVPGRLVFDLDPGPEVEFSTV
IDAAREIRDRLAELGLVSFCKTTGGKGLHVVTPLAVSRRKKLSWEEAKAFAHDVCQRMAR
DNPDLYLIRMAKSQREGRIFLDYLRNDRMSTAVAPLSPRARPGAPVSMPLNWTQVKKGLD
PKRFTIRTVPELLRAGTAWQDYCEGQRSLEQAIKRLSKTNRAAA
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacaagctttcgacctacaaacagaagcgcgatttcaaggtcaccaaggaa
ccaagcggagcgggcaagctcagcccttccaatcgacgtcgcttcgtcattcagaaacat
gacgccacccagctgcactacgatcttcgtttggagctcgacggtgtcttcaaatcctgg
gctgtgaccaaggggccatcgctcgatccgcaagacaagcgccttgcggtggaggtcgag
gatcacccgctcgactatggcgatttcgaaggcaccattccgaaaggccagtatggcggg
ggcactgtcatgctgtgggatcgcggttattgggagccggaaggaaatcggacgccggaa
gaggcgctggccaaaggtgatttcaagttcacccttgagggcaaacggctccacggcagc
tttgtgctcgtgcgcatgcgtcatgatcgcgatggtggaaaacgaacgaattggctcctg
atcaaacatcgtgacgatttttcggtcgatgagaacggagcggctgtccttgaggaaaac
gacacctcagtcgcctccggacgctcgatggacgcgatcgcgtcgggcaaaggcagaaag
ccaaagcccttcatggtggagggcggcgctattggggccgacgcggtgtgggacagcaac
cacggtcttgccgccgaggaacgccaggcgggagcggggagccgaaaaaagtctgtgtcc
gccagacgcccgaaatccagaatgcctgatttcatcccaccgcagttatgcgaaacactg
gagcgccctccgaacggcggtggctggatccatgagatcaaatttgatggctatcgcatt
cagatgcgggtcgagaatggcaaggcgactttgaagacccgcaaaggtctcgactgggca
gccaaatttgccgccatcgccaagtcggcagcagctctgcctgatgccatcatcgatggt
gagatctgtgctcttgacgaaaaaggagcacccgattttgctgcccttcaggcagcactt
tccgaaggcgagaccgatgccttggtctactttgcattcgatctcctgtttaccggcgat
gaggacctgcgagagttcgcgctgacacagcggaaagaacggctcgcagcgatcctggag
gatgcgggcgacgatccgcatctgcgcttcgccgagcattttgaaaccgacggtgatgcc
gtgctgcgatctgcccgccgtctttcccttgagggcatcgtttccaagaaagcggatgcg
ccgtaccagtccggccgctccgacacatgggcgaaatccaaatgccgcgcaggtcatgaa
gtcgtcatcggcgcctatgcaacgaccaacggcaagttccgttctctccttgttggcgtc
aatcgtggcgagcatttcgtctatgtcggccgggtcgggacaggctatggcgcaaagacc
gtccaaacgctgttgccgaagctgcaaaagctagaggcctccaagtcacccttcactggt
aacggggcgccaaagaaggatcggaatatcgtttggctcaagccggatctcgttgccgag
atcgagttcgccggctggacggccgatggccaggtgcggcaggccgcattcaagggcttg
agggaagacaaacccgcgggcgaggtgaaagcggaaaaaccggcgtcaccgtcaaaggct
gccgtgtccgatccttcgacggtaaagccagtaccaaatcgtattcgcaagggcgggaag
gccgaggtcatggacgtgctgatttccagcccggaaaaacctctatggccggatggtggc
gatgggaagccggtgaccaaggttgagcttgcccaatattatgaggcggtcgggtcctgg
ctgatcgatcatatcaaagggcggccctgttcgatcattcgcactcccgacgggattggc
ggcgagcaattcttccagcgacatgccatgccgggaacatcgaacctgctcgagctggtc
accgtattcggggacaagaagccctacctgcagatcgaccgcgtcgaggggcttgcggcg
atcgcccagatcggtggtgtcgaactgcatccctggaattgcgagcccgggaaaccggag
gtgcccggccgcctggtgttcgatctggacccgggccccgaagtcgagttttccaccgtc
attgacgcggcgcgggaaattcgcgaccggttggcagaactcgggctggtaagcttctgc
aagacgacgggtggcaagggactgcacgtcgtaacgccgcttgccgtgtcgcgacggaag
aaattgagttgggaagaggcgaaggcttttgcccatgatgtctgtcagcggatggcccgc
gacaatccagatctttacctgatcaggatggcgaagagccagcgcgagggccgcatcttc
ctcgactacttgcgcaacgacaggatgtcgaccgctgttgcgcccctgtcgccgcgggcg
cgccccggcgccccggtgtcgatgccgctcaactggacgcaggtcaaaaagggtctcgat
cccaaacgcttcacgatccggaccgtgccagagcttctgagagcggggaccgcttggcag
gattattgtgaaggccagcgctcgctggagcaggcgatcaagcgcctgagcaaaacgaac
agggctgcggcgtag
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