KEGG   Ensifer canadensis: J3R84_35880
Entry
J3R84_35880       CDS       T09166                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ecaa  Ensifer canadensis
Pathway
ecaa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ecaa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    J3R84_35880 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ecaa03400]
    J3R84_35880 (ligD)
Enzymes [BR:ecaa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J3R84_35880 (ligD)
DNA repair and recombination proteins [BR:ecaa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     J3R84_35880 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: UBI80279
LinkDB
Position
pT173d:complement(585899..588553)
AA seq 884 aa
MASDKLSTYKQKRDFKVTKEPSGAGKLSPSNRRRFVIQKHDATQLHYDLRLELDGVFKSW
AVTKGPSLDPQDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNRTPE
EALAKGDFKFTLEGKRLHGSFVLVRMRHDRDGGKRTNWLLIKHRDDFSVDENGAAVLEEN
DTSVASGRSMDAIASGKGRKPKPFMVEGGAIGADAVWDSNHGLAAEERQAGAGSRKKSVS
ARRPKSRMPDFIPPQLCETLERPPNGGGWIHEIKFDGYRIQMRVENGKATLKTRKGLDWA
AKFAAIAKSAAALPDAIIDGEICALDEKGAPDFAALQAALSEGETDALVYFAFDLLFTGD
EDLREFALTQRKERLAAILEDAGDDPHLRFAEHFETDGDAVLRSARRLSLEGIVSKKADA
PYQSGRSDTWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVNRGEHFVYVGRVGTGYGAKT
VQTLLPKLQKLEASKSPFTGNGAPKKDRNIVWLKPDLVAEIEFAGWTADGQVRQAAFKGL
REDKPAGEVKAEKPASPSKAAVSDPSTVKPVPNRIRKGGKAEVMDVLISSPEKPLWPDGG
DGKPVTKVELAQYYEAVGSWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELV
TVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPGKPEVPGRLVFDLDPGPEVEFSTV
IDAAREIRDRLAELGLVSFCKTTGGKGLHVVTPLAVSRRKKLSWEEAKAFAHDVCQRMAR
DNPDLYLIRMAKSQREGRIFLDYLRNDRMSTAVAPLSPRARPGAPVSMPLNWTQVKKGLD
PKRFTIRTVPELLRAGTAWQDYCEGQRSLEQAIKRLSKTNRAAA
NT seq 2655 nt   +upstreamnt  +downstreamnt
atggccagcgacaagctttcgacctacaaacagaagcgcgatttcaaggtcaccaaggaa
ccaagcggagcgggcaagctcagcccttccaatcgacgtcgcttcgtcattcagaaacat
gacgccacccagctgcactacgatcttcgtttggagctcgacggtgtcttcaaatcctgg
gctgtgaccaaggggccatcgctcgatccgcaagacaagcgccttgcggtggaggtcgag
gatcacccgctcgactatggcgatttcgaaggcaccattccgaaaggccagtatggcggg
ggcactgtcatgctgtgggatcgcggttattgggagccggaaggaaatcggacgccggaa
gaggcgctggccaaaggtgatttcaagttcacccttgagggcaaacggctccacggcagc
tttgtgctcgtgcgcatgcgtcatgatcgcgatggtggaaaacgaacgaattggctcctg
atcaaacatcgtgacgatttttcggtcgatgagaacggagcggctgtccttgaggaaaac
gacacctcagtcgcctccggacgctcgatggacgcgatcgcgtcgggcaaaggcagaaag
ccaaagcccttcatggtggagggcggcgctattggggccgacgcggtgtgggacagcaac
cacggtcttgccgccgaggaacgccaggcgggagcggggagccgaaaaaagtctgtgtcc
gccagacgcccgaaatccagaatgcctgatttcatcccaccgcagttatgcgaaacactg
gagcgccctccgaacggcggtggctggatccatgagatcaaatttgatggctatcgcatt
cagatgcgggtcgagaatggcaaggcgactttgaagacccgcaaaggtctcgactgggca
gccaaatttgccgccatcgccaagtcggcagcagctctgcctgatgccatcatcgatggt
gagatctgtgctcttgacgaaaaaggagcacccgattttgctgcccttcaggcagcactt
tccgaaggcgagaccgatgccttggtctactttgcattcgatctcctgtttaccggcgat
gaggacctgcgagagttcgcgctgacacagcggaaagaacggctcgcagcgatcctggag
gatgcgggcgacgatccgcatctgcgcttcgccgagcattttgaaaccgacggtgatgcc
gtgctgcgatctgcccgccgtctttcccttgagggcatcgtttccaagaaagcggatgcg
ccgtaccagtccggccgctccgacacatgggcgaaatccaaatgccgcgcaggtcatgaa
gtcgtcatcggcgcctatgcaacgaccaacggcaagttccgttctctccttgttggcgtc
aatcgtggcgagcatttcgtctatgtcggccgggtcgggacaggctatggcgcaaagacc
gtccaaacgctgttgccgaagctgcaaaagctagaggcctccaagtcacccttcactggt
aacggggcgccaaagaaggatcggaatatcgtttggctcaagccggatctcgttgccgag
atcgagttcgccggctggacggccgatggccaggtgcggcaggccgcattcaagggcttg
agggaagacaaacccgcgggcgaggtgaaagcggaaaaaccggcgtcaccgtcaaaggct
gccgtgtccgatccttcgacggtaaagccagtaccaaatcgtattcgcaagggcgggaag
gccgaggtcatggacgtgctgatttccagcccggaaaaacctctatggccggatggtggc
gatgggaagccggtgaccaaggttgagcttgcccaatattatgaggcggtcgggtcctgg
ctgatcgatcatatcaaagggcggccctgttcgatcattcgcactcccgacgggattggc
ggcgagcaattcttccagcgacatgccatgccgggaacatcgaacctgctcgagctggtc
accgtattcggggacaagaagccctacctgcagatcgaccgcgtcgaggggcttgcggcg
atcgcccagatcggtggtgtcgaactgcatccctggaattgcgagcccgggaaaccggag
gtgcccggccgcctggtgttcgatctggacccgggccccgaagtcgagttttccaccgtc
attgacgcggcgcgggaaattcgcgaccggttggcagaactcgggctggtaagcttctgc
aagacgacgggtggcaagggactgcacgtcgtaacgccgcttgccgtgtcgcgacggaag
aaattgagttgggaagaggcgaaggcttttgcccatgatgtctgtcagcggatggcccgc
gacaatccagatctttacctgatcaggatggcgaagagccagcgcgagggccgcatcttc
ctcgactacttgcgcaacgacaggatgtcgaccgctgttgcgcccctgtcgccgcgggcg
cgccccggcgccccggtgtcgatgccgctcaactggacgcaggtcaaaaagggtctcgat
cccaaacgcttcacgatccggaccgtgccagagcttctgagagcggggaccgcttggcag
gattattgtgaaggccagcgctcgctggagcaggcgatcaagcgcctgagcaaaacgaac
agggctgcggcgtag

DBGET integrated database retrieval system