Erigeron canadensis (horseweed): 122578211
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Entry
122578211 CDS
T07610
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122578211
Spliceosome [BR:
ecad03041
]
Complex A
Other components
Complex A specific factors
122578211
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
RRM_1
KH_1
zf-CCHC
eIF3g
RRM_5
PHD_4
Nup35_RRM
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
122578211
NCBI-ProteinID:
XP_043606055
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All DBs
Position
8:50048329..50059053
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AA seq
682 aa
AA seq
DB search
MDSETLIVDSAAAAAAAETLIVDGKPTLISVEDINGKRRRRSRWEPTAVDDNSTGKKRKS
RWADEEPAGFQLPDFMKDFTIDSDPEVQALNARLMEISRILQSGQQLDDRVVENRSPSPD
PIYDNIGTRINTREYRARERLNKERQDIISLILKRNPSFKPPSDYRPPKLHKKLFIPMKQ
YPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRFGGQKLQRSSDFKYDPSEN
EDLHVLVEAETQEGLDAAAGMVEKLLHPVDEGLNEHKRQQLRELAALNGTIRDDEYCRLC
GEPGHRQFACPSRMSTFKSDVLCKICGDGGHPTIDCPVKGTHAGKKMDDEYQSFLAELGG
TLPEGVTRNTTTPLPITINTRNIDDDDNAHSLPWSSLSAHPGLGSNAASSKMMMMSTGAG
IMGKEIDDTNLYIGYLPPTLEDDALIRLFSPFGEIVMAKVIKDRVTGLSKGYGFVKYSDI
SQANQAIASMNGYRIDGRVIAVRVAGKPPPPTLPPGAPASTNYPGGYPSQMAPPPPPPPH
PVSYAPPWGPPPPYASRPSPGYMSSSYPGTGQHYGVQYPPPPPPPHHNNSMTSTTTDPHP
PGGLHSQNTKSPSMSGTITNNQTVYPSAYSSYYSLPSPLASHSLVVDQQNFQSTPWSSNP
PADQTTTYSTDPEYDKFMAEMR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggattccgaaaccctaatagtcgattcagcagcagcagcagcagcagcagaaacccta
atagtagatggaaaacccaccctgatatccgttgaagatatcaacggcaaaaggagaagg
cgtagcaggtgggagcccacggcggttgatgataatagtaccgggaagaagaggaagtct
cgttgggcagatgaggaacctgcaggatttcagttgcctgatttcatgaaagacttcact
atagattctgatcctgaagttcaagccttgaatgcacggctgatggagatcagtaggatc
ttacaatctggtcaacagttggatgaccgcgttgtcgaaaacaggtctccttcgcctgat
cccatttatgataatattggcaccaggattaacacacgtgaatacagggcccgagaaagg
ctcaacaaagaaaggcaagatattatttctcttattctcaaacgaaacccttcttttaaa
cccccttctgattacagacctcctaaactccataagaaactctttatccctatgaaacaa
tatcccggctataatttcattggtcttattattggccctagaggtaacacccaaaaacgt
atggaaaaagagaccggcgctaagattgtcattcgtggcaaaggctccgtcaaagaaggc
cgctttggaggacagaagctgcaacgctcttctgatttcaaatacgatccttccgaaaac
gaagatttacatgttctggttgaagcagaaacccaggaaggacttgatgccgctgcaggt
atggttgaaaagcttttgcatcctgttgatgaaggcttgaatgaacataagaggcagcaa
cttcgtgagcttgctgctctcaacggtactattagagatgacgagtattgtaggctctgt
ggtgaaccagggcatcgtcagtttgcttgtccctctcgcatgtccacttttaagagtgat
gtactttgcaagatatgtggtgatggtggacacccgacaatcgattgtcctgtcaaaggg
actcatgctggaaagaaaatggatgacgagtatcagagtttcttggcagaacttggggga
acactaccagagggtgttacaagaaacaccaccaccccattgcccatcaccattaatact
cgtaatattgatgatgatgataatgctcattctcttccatggagctctttgtctgcgcat
cctggtctcggaagcaacgctgcatcatcaaagatgatgatgatgtcaactggtgctgga
attatgggtaaagaaatcgatgatacaaatctatatattggttaccttcctccgactctc
gaggacgatgccctgatacgattattttcaccttttggggaaatagtgatggcaaaagtt
attaaagatagggtaactggtttaagtaaaggctatggctttgtaaagtattctgatata
tctcaggcgaatcaggccattgcaagcatgaacggttatcgtattgatggaagagtaatt
gcagttagagttgctggaaagccacccccaccaaccttaccccctggtgcacctgcctct
actaattatcctggtggatatccatctcagatggcacctcctcctcctcctcctcctcat
ccggtcagttatgctcctccttggggaccaccaccgccttatgcttctcgtccctctcct
gggtatatgtcgtcatcctacccaggtacaggtcaacattatggtgttcaataccctcct
cctcctcccccgccgcatcataacaacagcatgacatcgacaactactgatccccatcct
cctggtggattgcattctcaaaatacaaaatccccatccatgtctgggacaataacaaac
aatcaaactgtatatccttcagcctactcttcttattacagtttaccttcaccacttgct
tctcattcgctagtggttgaccagcaaaactttcaaagcaccccttggtcttcaaatcca
cctgcagaccaaactactacttattccacagaccctgagtatgacaagtttatggccgag
atgagatga
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