Erigeron canadensis (horseweed): 122581068
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Entry
122581068 CDS
T07610
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03022
Basal transcription factors
ecad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122581068
09124 Replication and repair
03420 Nucleotide excision repair
122581068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122581068
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122581068
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122581068
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122581068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Tfb4
VWA_3
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
122581068
NCBI-ProteinID:
XP_043609149
LinkDB
All DBs
Position
1:57808704..57811396
Genome browser
AA seq
424 aa
AA seq
DB search
MYNNGRGKKPMTTGERQEDDDDEEEGGGNERDMEAWERAYTDERSWESLQEDESGNLRPI
DNQALHHAQYRRRLRSLSAASAASRIQKGLIRYLFLVIDLSRAAGEMDFRPSRMMVVAKQ
VEAFVREFFDQNPLSQIGLVVIKDGVAQSLTDLGGSPESHIKALMGKLGCSGEASLQNAL
ELVHEQLDQIPSYGHREVIILYSALSTCDPGDVMETIQKCKKSKIRCSVIGLSAEIYICK
YLSQETGGLYSVALDEAHLKELILDHAPPPPAIAEFAIANLIKMGFPQRAAEGVISICSC
HKEAKFGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPVTPFEDVAPKIL
PNQDPPPKNCFGCQQSLLNPGGMPSRCVRCPKCKRFFCLDCDIYIHESLHNCPGCESLNL
LVSQ
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtacaataacggaagagggaaaaagccgatgacgacaggggagcgacaagaagacgac
gacgacgaagaagaaggaggaggaaatgaaagagacatggaagcgtgggaaagagcatat
acagatgaacgatcatgggaatctttacaagaagatgaatctggcaatcttagacctatt
gataatcaagctttacatcacgcccagtatcgccgccgtctccgttctctctccgccgct
tccgccgcctctcgtattcagaaaggcctcattcgttatctctttcttgttattgatctc
tccagggcggctggagagatggattttcgtccaagtcgaatgatggtggttgctaaacaa
gtagaggctttcgtaagggagttttttgaccagaatccattgagtcagattggtctggta
gttataaaagacggggtggctcagtcattgaccgaccttggtggcagccccgagtctcat
atcaaggctctgatgggcaaacttgggtgctcaggagaagcgtcccttcagaatgcttta
gaacttgtacatgaacaacttgatcaaatcccttcatatggtcatcgagaagtgatcatc
ttgtattcggctctgagtacttgtgatccaggagatgtcatggagaccattcagaaatgc
aagaaatccaagattaggtgttcggttattggtctctctgctgaaatttatatatgcaag
tatctgtctcaagaaaccggagggttatactctgttgctttggatgaggcacatttgaag
gagctaatactagaccatgcaccaccaccaccagccatagctgaatttgctatagctaat
ttaataaagatgggtttcccacaaagagctgctgagggtgttatctccatatgttcatgt
cataaagaagctaaatttggtggggggtacacttgcccaagatgcaaagctcgtgtttgc
gagttgcctactgagtgtcgtatttgtgggttaactcttgtttcttctcctcatctagca
cgatcttatcaccatctgttcccagtaacaccgtttgaagatgttgcccctaagattcta
cccaatcaagatcctcctcctaagaattgttttggttgtcaacagagcctcttgaatcct
gggggcatgccaagccgttgtgtcaggtgcccaaagtgtaaacgtttcttttgcctcgac
tgcgacatatacattcatgagagtttgcataactgcccgggttgtgagagcttaaatctc
ctagtcagtcaatga
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