Erigeron canadensis (horseweed): 122582429
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Entry
122582429 CDS
T07610
Name
(RefSeq) serine/arginine-rich-splicing factor SR34-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122582429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122582429
Spliceosome [BR:
ecad03041
]
Common components
Common spliceosomal components
SR proteins
122582429
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
122582429
NCBI-ProteinID:
XP_043610753
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All DBs
Position
9:complement(9059101..9063925)
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AA seq
299 aa
AA seq
DB search
MSRSSRTLYVGNLPGDIREREVEDLFYKYGPIARIDLKVPPRPPGYAFVEFEEARDAEDA
IRGRDGYDFDGHRLRVELAHGGRGNSSSTDRYNSHGSSRGGGGGGGGHGGVSRRSDYRVL
VTGLPSSASWQDLKDHMRRAGDVCFSQVFKEGGGTTGIVDYTNYDDMKYAIRKLDDSEFR
NAFSRGVIRVKEYDSSRSRSRSRSRSRSRSRSYSRSRSRSRSKSPKAKSSRRSKSRSKSA
SPRARSKSASPRPSKARSPSRSRSPPPSRSKRVSKSPKKRSPSKSRSPSKSRSRSRSKS
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgagtaggtcaagcaggactttatatgttggaaatcttccgggtgatattcgcgaacgc
gaagttgaagatttgttttacaagtatggtccaatagctcgcattgatctgaaggttcca
cctagacctccaggttatgcttttgttgagtttgaagaggcccgggatgctgaagatgcc
atcaggggccgggatggctatgattttgatgggcatagattgagggtcgagcttgctcat
ggtggccgtggcaattcatcttctacggatcgttataatagtcatggaagtagtcggggt
ggtggtggtggtggtggtggccatggtggagtttctaggcggtctgattatagagttttg
gtgactggattgccttcttctgcttcatggcaagaccttaaggatcacatgcgtcgagct
ggggatgtttgcttctcccaagtttttaaagagggtggtggaaccacagggattgtagac
tacacaaattatgatgacatgaaatatgcaataaggaaattggatgactctgagttccga
aatgctttctcacgtggagttattcgtgtaaaggaatatgattcaagccgctctaggagc
cggagccgtagtcgcagcaggagcaggagtaggagctatagccgtagtcgcagcaggagc
cgaagcaagtctccaaaagcgaaatcttctcgtcgttcaaaatctcgttcgaagtctgct
tctcctcgtgctcgttcgaagtctgcttctccccgcccatcaaaagcaagatctccctca
agatccagatccccaccaccatctcgctctaagcgtgttagtaaaagtcctaagaagcgc
agtcctagcaagagcaggagcccaagcaagagcaggagtcgtagcaggagcaagagttaa
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