Erigeron canadensis (horseweed): 122585122
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Entry
122585122 CDS
T07610
Name
(RefSeq) WD repeat-containing protein 3
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122585122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122585122
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122585122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Utp12
NBCH_WD40
WD40_like
Nup160
WDR54
RMC1_N
PROPPIN
Utp13
Med19
Motif
Other DBs
NCBI-GeneID:
122585122
NCBI-ProteinID:
XP_043613156
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All DBs
Position
1:53915411..53923988
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AA seq
961 aa
AA seq
DB search
MVKSYLRYEPAAAFGVITSIDSNITFDTSGKHLLAPALEKIAVWHIRQGVCAKTLSPSTQ
TRGPSIAVTSIAAVPSSSSLIASGNADGSIRIWDYERGTCETTLNGHKGATTVLRFNKSG
SLLASGSKDNDIVLWDVIGEVGLFRLRGHRDQVTDLAFLDSGKKLVSASKDKFLRVWDLD
TQHCTQIIGGHHSEIWSIDVDADQRYLVTGSADSELRFYTIKHEITDGQSVSKTSPTDTD
GRDSSVESKWESLKFFGEIQRQSKDRVATVRFNKSGNLLACQVAGKTVEIYRVLDETEAK
RKAKRRTNRKKERKSSKTIDAANSGNIDNELKDDGNLTMVTVPDVFKLLETLRANKKICS
MSFSPVTSKKSLDTLALSLNNNLLEVYSIDSSSTPKTSASSSISKSSAIELQGHRSDVRS
VTLSSDSTLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLFVPGNKYAVIGTKSGDLEI
IDVRSSTTVEVVKAHTGSVQSIVPTPDGGGFVTGSIDRDIKFWEYETTKVPGQDLVNLTV
TNVRTLPMNDDVIVVSVSPDGRHIAAALLDCTVKVFYMDTLKFFLTLYGHKLPVLCMDMS
SDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHADSVTAVKFVQNTHYMFSVGKDRLVKYW
DADKFELLLTLEGHHAEVWCVSISHRGDFLVTGSHDRSIRRWDRTEEPFFLEEEKEKRLE
EMFEADLDNSLENRYLPQQELPEEGAVAVAGKKTQETLSATDSIIEALDIAVEELKRIAE
HEAEKRRGKTAEFRSNIIMLGLSPSEYILLAVSKVHTNDLEQTLLALPFADALNLLSYLK
EWSSNPDKVELVCRIATVLLQLHHNQLVATTSSRPVLAVLRDILHARVKECKDTLGFNLA
AMDHLRQLMASKSDAPFQDAKEKLLEIRSQQSKRVEARADMKSERRKKKKKQKKDDGHVW
S
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaatcgtatctccgatacgaaccggcggcggcgttcggtgtaattacttcaatt
gactctaacatcactttcgatacttccggcaaacatttactagccccggcgcttgaaaag
atcgctgtttggcatatccgtcaaggcgtttgcgccaaaacactttcgccgtcaactcaa
actcgtggtccgtctatcgccgttacgtctattgcagctgttccatcttcttcttctctg
atagctagtgggaatgctgatggaagtataagaatttgggattatgagagaggaacctgc
gagaccacattgaatgggcacaaaggggctactacagttctgcggtttaacaagtcagga
tcattacttgcttccggaagcaaagacaatgacattgttttatgggatgttattggtgaa
gttggactttttcgactacgtggccatcgtgaccaggttactgatctcgctttcttggat
tctggtaaaaaacttgttagtgcatctaaggacaagtttttaagggtttgggatcttgac
acccaacattgtacacaaataattggtggtcatcacagtgaaatttggtccatcgatgtt
gatgctgatcagagatatttagtgactggatcagctgattcagagctcagattttatacc
ataaaacatgaaattacagatggtcaatctgtatcgaaaactagtccaactgatactgat
ggtagagattcatctgttgaaagcaaatgggaaagtttgaagttttttggtgaaatccaa
cgacaaagcaaagatcgtgttgcaacagttagatttaacaagtctggcaaccttctagct
tgtcaagttgcagggaagacagtggagatatatcgtgtattggatgagacagaagcgaaa
cgtaaagcaaaaagaagaacaaatcgaaaaaaagaaaggaaatcatctaaaacaattgac
gctgccaatagtggaaacatagacaatgaattaaaagatgatggaaacctgaccatggtt
acagtccctgatgtatttaagcttttggagactcttagagctaacaagaaaatatgttct
atgtcattctctcccgttacgtccaaaaagtcgctagatactttagcattgtcgttaaac
aacaatttgctggaggtgtattcaatagatagcagctcaaccccaaaaacaagtgctagc
agctctatttcaaaatcaagtgcaattgagcttcaaggtcatcgttctgatgttagaagt
gttacgcttagctcagacagcacacttttaatgtcaacaagtcataatgctgtgaagatt
tggaatccaagtactggttcttgtcttcgaactatcgattcaggatatgggctatgtagt
ttgtttgttcctggtaacaagtatgctgtaattggcacaaaaagcggggatcttgaaatt
attgacgtgagaagtagcactactgttgaagtagtgaaagctcatacgggctctgttcaa
tcaattgttcccacaccagatggtggcggttttgtcactgggagcatagatcgtgatatt
aagttttgggagtatgaaaccacaaaagttcctggtcaggatttggtgaatcttacagtg
accaatgtgaggacattaccaatgaatgatgatgttatagtggtttctgtgagccctgat
gggaggcatatagcggccgcattattggattgcactgtgaaggtcttctacatggatact
ctgaaatttttccttacattgtatggtcacaagcttccagtattgtgtatggatatgtca
tctgatggggatcttattgttactggttctgctgacaaaaacttgaaaatatggggtttg
gactttggtgactgtcacaagtctatatttgcacatgccgatagtgtaacagcagtgaag
tttgttcagaacacccattacatgttcagtgtcgggaaagaccggctggtaaaatactgg
gatgctgataaatttgagttacttttaaccctagaaggccatcatgctgaagtttggtgt
gtctctatcagtcaccgtggtgattttcttgtcacagggtctcatgatcgatcaattcga
cgttgggaccgtactgaagaacccttttttctcgaggaagagaaagagaagagattggaa
gaaatgtttgaggctgaccttgacaactccttagaaaacagatatttgcctcagcaagaa
cttccagaggagggggctgtagctgtagctggaaaaaaaactcaagaaactttatcagca
actgattcaattattgaagcattagatattgcagtagaagaattgaaacgaattgctgaa
cacgaggcggaaaagaggaggggaaaaactgcagagtttcgatctaatattattatgctg
gggctttctccatccgagtatatcctcctagcagtctcaaaagttcatacgaatgacctt
gagcagacgttattggctctgccatttgcagatgctttgaatcttttatcatatttaaaa
gagtggtcctcgaatcctgataaggttgagctggtttgcaggatcgccacggtgttactg
cagttgcatcataatcagcttgttgctaccacaagctccagacctgttctggctgtgttg
agagatatacttcatgctagagttaaggaatgcaaggatactcttggattcaatctggca
gctatggatcacctcaggcaattaatggcttcaaaatctgatgcacctttccaagatgca
aaggaaaaattactcgaaatacgctcacagcagtcgaaacgtgttgaagcaagggcagac
atgaaaagtgagaggaggaagaagaagaagaagcaaaagaaggatgatgggcacgtgtgg
tcttaa
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